Merge pull request #132 from davidmeunier79/modif_github_actions

Modif GitHub actions

Author: gauzias

.github/workflows/build_doc.yml

@@ -0,0 +1,43 @@
+name: "Test and deploy"
+
+on:
+  push:
+    branches:
+        [ master ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@master
+      - name: Set up Python  3.10.5
+        uses: actions/setup-python@v2
+        with:
+          python-version:  3.10.5
+
+      - name: Install dependencies
+        run: |
+            pip install -e .[doc]
+            sudo apt-get install build-essential  graphviz libgraphviz-dev
+            pip install --upgrade pygraphviz graphviz
+
+      - name: Test with pytest
+        run:
+            py.test --cov macapype --ignore=examples/ --ignore=run_examples/
+
+      - name: Build the Doc 🔧
+        run: |
+          cd docs
+          make clean
+          make html
+          touch _build/html/.nojekyll
+
+      - name: Deploy Github Pages 🚀
+        uses: JamesIves/[email protected]
+        with:
+          branch: gh-pages
+          folder: docs/_build/html/
+          clean: true
+          ssh-key: ${{ secrets.DEPLOY_KEY }}

.github/workflows/continuous_integration.yml

@@ -1,5 +1,5 @@
 name: Python package
-on: [push, pull_request]
+on: [pull_request]
 
 jobs:
   build:
@@ -22,7 +22,7 @@ jobs:
           python -m venv slam-env
           source slam-env/bin/activate
       - name: Linting
-        run: | 
+        run: |
             pip install flake8
             flake8 --ignore=E501,W503,W504 slam/
             flake8 --ignore=E501,W503,W504 tests/
@@ -33,6 +33,6 @@ jobs:
         run: |
             pip install pytest pytest-cov coveralls
             pytest -W default --cov=slam/
-          
-         
+
+
 

doc/conf.py

@@ -76,10 +76,14 @@
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
+
+import slam
 # The short X.Y version.
-version = "0.0.1"
+version = slam.__version__
+
 # The full version, including alpha/beta/rc tags.
-release = "0.0.1"
+release = slam.__version__
+
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

setup.py

@@ -1,15 +1,40 @@
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 
+import re
 from setuptools import setup, find_packages
 
 BASE_REQUIREMENTS = ["numpy==1.19.5", "scipy", "trimesh", "nibabel>=2.1", "networkx"]
 TEST_REQUIREMENTS = ["flake8", "autopep8", "pytest", "pytest-cov", "coveralls"]
+
+DOC_REQUIREMENTS = ['sphinx',
+                    'sphinx-gallery',
+                    'sphinx_bootstrap_theme',
+                    'numpydoc',
+                    'six',
+                    'python-dateutil',
+                    'sphinxcontrib-fulltoc',
+                    'matplotlib']
+
 DIST = ["tvb-gdist"]
 
+# grab version
+verstr = "unknown"
+try:
+    verstrline = open('slam/_version.py', "rt").read()
+except EnvironmentError:
+    pass  # Okay, there is no version file.
+else:
+    VSRE = r"^__version__ = ['\"]([^'\"]*)['\"]"
+    mo = re.search(VSRE, verstrline, re.M)
+    if mo:
+        verstr = mo.group(1)
+    else:
+        raise RuntimeError("unable to find version in yourpackage/_version.py")
+
 setup(
     name="brain-slam",
-    version="0.0.5",
+    version=verstr,
     packages=find_packages(),
     author="Guillaume Auzias",
     description="Surface anaLysis And Modeling",
@@ -22,6 +47,7 @@
     extras_require={
         "full": DIST,
         "dev": DIST + TEST_REQUIREMENTS,
+        "doc": DIST + TEST_REQUIREMENTS + DOC_REQUIREMENTS,
     },
     classifiers=[
         "Programming Language :: Python :: 3",

slam/_version.py

@@ -0,0 +1 @@
+__version__ = '0.0.5'