Bump to brainglobe-space dependency (#176)

* Add explicit dependency

* Move tox.ini into pyproject as per BG standards

* bg-space -> brainglobe-space

Author: willGraham01

README.md

@@ -88,7 +88,7 @@ The name of the resulting atlases is the string to pass with the `--atlas` flag.
 ### Input data orientation
 
 If your data does not match the BrainGlobe default orientation (the origin voxel is the most anterior, superior, left-most voxel), then you must specify the orientation by using the `--orientation` flag.
-What follows must be a string in the [bg-space](https://github.com/brainglobe/bg-space) "initials" form, to describe the origin voxel.
+What follows must be a string in the [brainglobe-space](https://github.com/brainglobe/brainglobe-space) "initials" form, to describe the origin voxel.
 
 If the origin of your data (first, top left voxel) is the most anterior, superior, left part of the brain, then the orientation string would be "asl" (anterior, superior, left), and you would use:
 

brainreg/core/backend/niftyreg/run.py

@@ -2,7 +2,7 @@
 import os
 from pathlib import Path
 
-import bg_space as bg
+import brainglobe_space as bg
 import imio
 import numpy as np
 from bg_atlasapi import BrainGlobeAtlas

brainreg/core/main.py

@@ -1,6 +1,6 @@
 import logging
 
-import bg_space as bg
+import brainglobe_space as bg
 import imio
 from bg_atlasapi import BrainGlobeAtlas
 from brainglobe_utils.general.system import get_num_processes

brainreg/napari/register.py

@@ -5,7 +5,7 @@
 from enum import Enum
 from typing import Dict, List, Tuple
 
-import bg_space as bg
+import brainglobe_space as bg
 import napari
 import numpy as np
 from bg_atlasapi import BrainGlobeAtlas

brainreg/napari/util.py

@@ -1,7 +1,7 @@
 import logging
 from dataclasses import dataclass
 
-import bg_space as bg
+import brainglobe_space as bg
 import numpy as np
 import skimage.transform
 from bg_atlasapi import BrainGlobeAtlas

pyproject.toml

@@ -12,7 +12,6 @@ classifiers = [
     "Intended Audience :: Science/Research",
     "Operating System :: OS Independent",
     "Programming Language :: Python",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
@@ -21,7 +20,7 @@ classifiers = [
 requires-python = ">=3.9"
 dependencies = [
     "bg-atlasapi",
-    "bg-space",
+    "brainglobe-space>=1.0.0",
     "brainglobe-utils>=0.2.7",
     "fancylog",
     "imio",
@@ -95,3 +94,31 @@ line-length = 79
 exclude = ["__init__.py", "build", ".eggs"]
 select = ["I", "E", "F"]
 fix = true
+
+[tool.tox]
+legacy_tox_ini = """
+[tox]
+envlist = py{38,39,310,311}
+isolated_build = True
+
+[gh-actions]
+python =
+    3.8: py38
+    3.9: py39
+    3.10: py310
+    3.11: py311
+
+[testenv]
+extras =
+    dev
+    napari
+commands =
+    pytest -v --color=yes --cov=brainreg --cov-report=xml
+passenv =
+    CI
+    GITHUB_ACTIONS
+    DISPLAY
+    XAUTHORITY
+    NUMPY_EXPERIMENTAL_ARRAY_FUNCTION
+    PYVISTA_OFF_SCREEN
+"""