bl2bids fails on stampede2 "Invalid cross-device link:"

[soichih]

We need to troubleshoot this issue that happens on stampede2

Traceback (most recent call last):
  File "/home1/07062/brlife/abcd-spec/hooks/bl2bids.py", line 250, in <module>
    link(src, dest+"_T1w.nii.gz")
  File "/home1/07062/brlife/abcd-spec/hooks/bl2bids.py", line 150, in link
    os.link(src, dest)
OSError: [Errno 18] Invalid cross-device link: '../602ce4ae8b3974159b27ea98/5fb69d7b14a92dd7c2c06f0e/t1.nii.gz' -> 'bids/sub-30/ses-a1/anat/sub-30_ses-a1_task-a_run-6_T1w.nii.gz'
/tmp/slurmd/job7493941/slurm_script: line 11: kill: (11380) - No such process

[soichih]

I've released the patch made by @anibalsolon to stampede2 and resumed running jobs on stampede2 (max 1). Let's see how it behaves in the next couple of days / weeks.