ValueError: Conflicting values found for entity 'session' in filename

[soichih]

Here is the new error we run into while running the new 1.5.0 container. I think we can workaround this by simply not using the session directory as part of file name.

+ singularity run --cleanenv docker://poldracklab/fmriprep:1.5.0 --notrack --resource-monitor --skip_bids_validation --stop-on-first-crash --use-plugin=multi_proc.yml --output-spaces fsaverage5:res-2mm fsnative:res-2mm T1w:res-2mm template:res-2mm --force-bbr --force-syn --fs-license-file=.license.txt --skull-strip-template=NKI --work-dir=fmripworkdir --participant_label=sub-TTTEMPSUB fmripinput fmripout participant
�[91mERROR  : Could not write to /N/soft/rhel7/singularity/2.6.1/var/singularity/mnt/final/etc/localtime: Too many levels of symbolic links
�[0mProcess Process-2:
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
    self.run()
  File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 99, in run
    self._target(*self._args, **self._kwargs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/cli/run.py", line 547, in build_workflow
    layout = BIDSLayout(str(bids_dir), validate=False)
  File "/usr/local/miniconda/lib/python3.7/site-packages/bids/layout/layout.py", line 212, in __init__
    indexer.index_metadata()
  File "/usr/local/miniconda/lib/python3.7/site-packages/bids/layout/index.py", line 349, in index_metadata
    md_val))
ValueError: Conflicting values found for entity 'session' in filename /N/dc2/scratch/brlife/carbonate-workflows/5d9b87504ff6d3df3337f364/5d9b87504ff6d3736c37f367/fmripinput/sub-TTTEMPSUB/ses-SSSES/anat/sub-TTTEMPSUB_ses-SSSES_run-1_T1w.nii.gz (value='SSSES') versus its JSON sidecar (value='1'). Please reconcile this discrepancy.