BrainLife application to run freesurfer on OSG using fsurf.
As this application uses fsurf, you need to run this on any resource where fsurf credential is installed (~/.fsurf). fsurf itself is shipped with this application, but we download the latest version from http://stash.osgconnect.net/+fsurf/fsurf
Please see https://support.opensciencegrid.org/support/solutions/articles/12000008488-setting-up-fsurf-on-your-computer for more info on fsurf
git clone this repo
Create config.json on current directory.
{
"t1": "/N/u/hayashis/Karst/testdata/sca-service-freesurfer/t1.nii.gz"
}
Point to where you have your T1 anatonmy. It must be defaced and anonymized.
Visit https://brain-life.org
curl -L -o fsurf 'http://stash.osgconnect.net/+fsurf/fsurf'
chmod +x fsurf