httpS

Author: egonw

datasources.tsv

@@ -33,12 +33,12 @@ FlyBase	F	http://flybase.org/	http://flybase.org/reports/$id.html	FBgn0011293	ge
 GenBank	G	http://www.ncbi.nlm.nih.gov/genbank/	http://www.ncbi.nlm.nih.gov/nuccore/$id	NW_004190323	gene		0	urn:miriam:insdc	(\w\d{5})|(\w{2}\d{6})|(\w{3}\d{5})	GenBank		insdc	gene
 Gene Wiki	Gw	http://en.wikipedia.org/wiki/Portal:Gene_Wiki	http://plugins.biogps.org/cgi-bin/wp.cgi?id=$id	1017	gene		0	urn:miriam:genewiki	\d+	Gene Wiki	P351	genewiki	gene
 GeneOntology	T	http://www.ebi.ac.uk/QuickGO/	http://www.ebi.ac.uk/QuickGO/GTerm?id=$id	GO:0006915	ontology		0	urn:miriam:go	^GO:\d{7}$	Gene Ontology	P686	go	ontology
-Gramene Arabidopsis	EnAt	http://www.gramene.org/	https://plants.ensembl.org/id/$id	ATMG01360	gene	Arabidopsis thaliana	1	EnAt	AT[\dCM]G\d{5}	Gramene Arabidopsis		ensembl.plant	gene
+Gramene Arabidopsis	EnAt	https://www.gramene.org/	https://plants.ensembl.org/id/$id	ATMG01360	gene	Arabidopsis thaliana	1	EnAt	AT[\dCM]G\d{5}	Gramene Arabidopsis		ensembl.plant	gene
 Gramene Genes DB	Gg	https://www.gramene.org/	https://archive.gramene.org/db/genes/search_gene?acc=$id	GR:0060184	gene		1	Gg	GR:\d+	Gramene Genes		gramene.gene	gene
-Gramene Literature	Gl	http://www.gramene.org/	http://www.gramene.org/db/literature/pub_search?ref_id=$id	6200	gene		0	Gl		Gramene Literature		gramene.reference	gene
+Gramene Literature	Gl	https://www.gramene.org/	https://www.gramene.org/db/literature/pub_search?ref_id=$id	6200	gene		0	Gl		Gramene Literature		gramene.reference	gene
 Gramene Maize	EnZm	https://www.ensembl.org	https://plants.ensembl.org/id/$id	GRMZM2G174107	gene		1	EnZm		Gramene Maize		ensembl.plant	gene
-Gramene Pathway	Gp	http://www.gramene.org/pathway		AAH72400	pathway		1	Gp		Gramene Pathway			pathway
-Gramene Rice	EnOj	http://www.gramene.org/	https://plants.ensembl.org/id/$id	Os05g0113900	gene		1	EnOj		Gramene Rice		ensembl.plant	gene
+Gramene Pathway	Gp	https://www.gramene.org/pathway		AAH72400	pathway		1	Gp		Gramene Pathway			pathway
+Gramene Rice	EnOj	https://www.gramene.org/	https://plants.ensembl.org/id/$id	Os05g0113900	gene		1	EnOj		Gramene Rice		ensembl.plant	gene
 Guide to Pharmacology	Gpl	http://www.guidetopharmacology.org/	https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$id	1627	gene		1		^\d+$	Guide to Pharmacology Targets	P5458	iuphar.receptor	gene
 Guide to Pharmacology Targets	Gpt	http://www.guidetopharmacology.org/	https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$id	256	metabolite		1		^\d+$	Guide to Pharmacology	P595	iuphar.ligand	metabolite
 HGNC	H	http://www.genenames.org	https://www.genenames.org/data/gene-symbol-report/#!/symbol/$id	DAPK1	gene	Homo sapiens	1	urn:miriam:hgnc.symbol	^[A-Za-z0-9]+	HGNC Symbol	P353	hgnc.symbol	gene
@@ -76,7 +76,7 @@ MetaCyc	Mc	http://www.metacyc.org/	http://www.metacyc.org/META/NEW-IMAGE?type=NI
 MGI	M	http://www.informatics.jax.org/	http://www.informatics.jax.org/marker/$id	MGI:2442292	gene	Mus musculus	1	urn:miriam:mgi	^MGI:\d+$	Mouse Genome Database	P671	mgi	gene
 MINT	Mi	http://mint.bio.uniroma2.it/mint/	http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$id	MINT-10000	interaction		1	urn:miriam:mint	^MINT\-\d{1,5}$	MINT		mint	interaction
 miRBase mature sequence	Mbm	https://www.mirbase.org/	https://mirbase.org/mature/$id	MIMAT0000001	gene		1	urn:miriam:mirbase.mature	MIMAT\d{7}	miRBase mature sequence	P2871	mirbase.mature	gene
-miRBase Sequence	Mb	http://microrna.sanger.ac.uk/	http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id	MI0000001	gene		1	urn:miriam:mirbase	MI\d{7}	miRBase Sequence	P2870	mirbase	gene
+miRBase Sequence	Mb	http://microrna.sanger.ac.uk/	https://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id	MI0000001	gene		1	urn:miriam:mirbase	MI\d{7}	miRBase Sequence	P2870	mirbase	gene
 Mondo	Mo	https://mondo.monarchinitiative.org/	https://monarchinitiative.org/disease/$id	MONDO:0000001	disease		1		MONDO:\d{7}	Mondo Disease Ontology	P5270	mondo	disease
 NanoMILE	Nmnm	https://cordis.europa.eu/project/id/310451		NP00262	material		1		^NP\d{5}$				material
 NASC Gene	N	http://arabidopsis.info/		ATMG00960-TAIR-G	gene	Arabidopsis thaliana	1	N	AT[\dCM]G\d{5}\-TAIR\-G	NASC Gene			gene
@@ -110,7 +110,7 @@ RESID	Res	http://www.ebi.ac.uk/RESID/	http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?
 Rfam	Rf		https://rfam.org/family/$id	RF00066	gene		1	Rf	RF\d+	RFAM		rfam	gene
 RGD	R	https://rgd.mcw.edu/	https://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$id	2018	gene	Rattus norvegicus	1	urn:miriam:rgd	^\d{4,7}$	Rat Genome Database	P3853	rgd	gene
 Rhea	Rh	http://www.ebi.ac.uk/rhea/	http://www.ebi.ac.uk/rhea/reaction.xhtml?id=$id	12345	interaction		1	urn:miriam:rhea	^\d{5}$	Rhea		rhea	interaction
-Rice Ensembl Gene	Os	http://www.gramene.org/Oryza_sativa	https://plants.ensembl.org/id/$id	Os04g54800	gene	Oryza sativa	1	Os		Rice Ensembl Gene		ensembl.plant	gene
+Rice Ensembl Gene	Os	https://www.gramene.org/Oryza_sativa	https://plants.ensembl.org/id/$id	Os04g54800	gene	Oryza sativa	1	Os		Rice Ensembl Gene		ensembl.plant	gene
 SGD	D	http://www.yeastgenome.org/	http://www.yeastgenome.org/locus/$id	S000028457	gene	Saccharomyces cerevisiae	1	urn:miriam:sgd	^S\d+$	SGD	P3406	sgd	gene
 Small Molecule Pathway Database	Sm	http://www.smpdb.ca/pathways	https://smpdb.ca/view/$id	SMP00001	pathway		1	urn:miriam:smpdb	^SMP\d{5}$	Small Molecule Pathway Database		smpdb	pathway
 SMART	Sma	http://smart.embl-heidelberg.de/	http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id	SM00015	protein		1	urn:miriam:smart	^SM\d{5}$	SMART	P3524	smart	protein