Update dependencies. Biopython now outputs correct line lengths, updated test hashes

Author: Nolan Woods

requirements.txt

@@ -1,4 +1,4 @@
-biopython>=1.73
-gffutils>=0.9
-jmespath>=0.9.4
+biopython>=1.78
+gffutils>=0.10.1
+jmespath>=0.10.0
 pbr

tests/test_convert.py

@@ -9,15 +9,15 @@
 class TestConvert(TestCase):
     input_path = Path('test-data/has_plasmids.gbff')
     input_type = 'genbank'
-    basic_hash = '2808187bb8e2231545e4d2d7a27dc802df4d1f7c0e953a8399300b2df6b0c737'
+    basic_hash = 'c62e16b6233f24c7da0356d11bf37691d17aaf6ea19becaae0c7a264a010a282'
     convert_type = 'embl'
-    convert_hash = '5598cb679f5f6c31349968ddde3646fe97296da42ee528ed3f46dec3f5490cbd'
-    info_hash = '91c19f7a3e3ed3f8e55a0d76289a881208cef78f4124edb0c3335e581ea6e48c'
+    convert_hash = 'b3331bfb8952db5dd043f2eaa216ca8369b14977f7cd46cd36bfa7d4626135b1'
+    info_hash = '16d51442f49c12184c51b47241d2c3b52252f4e920e89538226452b9a9e3c548'
     filter = '[?!(features[?type==`source`].qualifiers.plasmid)]'
-    record_hash = ('8d02b2087c4cea42da7c5f0a69b7a40d544d953c1a9d611b97bd116cc1f8cd7f',
-                   'e37ecc4288ae8b2c3bea25484326a69ced9679fa791162ed593064fdf535944d',
-                   'e142d7e1fbd103c96e3b728e3b75f7af6955c97cdbddb87c3202f2c1e2f133d4')
-    gff_hash = '8205a9eb570321605db4e5337f2c1d3f2ab6da6b9e43a7cfc35e5ac5182aad3c'
+    record_hash = ('566e86a245e21c8d0610b26b86cbe9d0aa9a44d03994acd998700b37155ba5b5',
+                   '23ac84c9b0367ff791eba3dc24ce580cafc105a97e60d26771c5ee71651b05fa',
+                   '2dc99ebdd320b7a1ce5fa1e2d6ca15c63d16f92f8bec629755cb7de2bb22021a')
+    gff_hash = '3f92c6fd87bba681866e17e210a96ec0e4745891f02813dea78d64af20c1ac8d'
 
     def setUp(self) -> None:
         self.workdir = TemporaryDirectory()