Logging issue with large numbers of sequencing reads

[jamesnemesh]

Instructions

When dealing with large numbers of sequencing reads, FilteredIterator 32 bit int are insufficient to store the number of reads:

INFO	2025-05-07 22:57:42	MissingTagFilteringIterator	Records pass [478064986] records fail [-1543690619] 
INFO	2025-05-07 22:57:42	MapQualityFilteredIterator	Records pass [-1456489106] records fail [1934554092] 
INFO	2025-05-07 22:57:42	TagValueFilteringIterator	Required Tag [XC] Records pass [-1876476725] records fail [419987619] 

Affected tool(s)

FilteredIterator, subclasses

Affected version(s)

• [X ] Latest public release version [version?]
• [X ] Latest development/master branch as of [date of test?]

Solution:

Change these from int to long. Look for other similar instances in logging code.

Drop-seq/src/java/org/broadinstitute/dropseqrna/utils/FilteredIterator.java

Lines 41 to 42 in 8a65f05

	private int recordsPass=0;
	private int recordsFail=0;