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Added ClumpsPTM documentation
Added _check_parameters.sh script, to ensure that WDL and .md files contain the same Input and Output parameters. Corrected parameters for various documentation files. Also, added a (partially complete) panoply_ssgsea_workflow and panoply_preprocess_gct documentation file.
Added panoply_blacksheep_workflow documentation
Update Data-Analysis-Modules:-panoply_blacksheep.md Added a note that blacksheep annotations cannot have empty or NA values at this time.
Update naming convention of analysis modules