turtle status (#31)

* Now with logo.

* adding status eye

Author: lbergelson

cromshell

@@ -59,6 +59,48 @@ OPTIONS=''
 
 ################################################################################
 
+function turtle() 
+{
+  if [[ -z $1 ]]; then
+    eye="'"
+  else
+    eye=x
+  fi
+  echo "                  __     "
+  echo "       .,-;-;-,. /${eye}_\\    "
+  echo "     _/_/_/_|_\\_\\) /     "
+  echo "   '-<_><_><_><_>=/\\     "
+  echo "     \`/_/====/_/-'\\_\\    " 
+  echo "      \"\"     \"\"    \"\"    " 
+}
+
+function thoughtBubble() 
+{
+
+  echo "          .-~~~-.              " 
+  echo "  .- ~ ~-(       )_ _          "  
+  echo " /                     ~ -.    "    
+  echo "|         CROMSHELL       \\  "      
+  echo " \\                         .'  "      
+  echo "   ~- . _           _ . -~     "   
+  echo "         ~~~~~~~~~~~"        
+  echo "               () "
+  echo "                o "
+  echo "                 ."
+}
+
+function logo()
+{
+	echo
+	echo '  +--------------------------+'
+	echo '  |        CROMSHELL         |'
+	echo '  +--------------------------+'
+  turtle
+	echo
+}
+
+################################################################################
+
 function simpleUsage()
 {
   echo -e "Usage:    ${SCRIPTNAME} <subcommand> [options]"
@@ -69,6 +111,7 @@ function simpleUsage()
 function usage() 
 {
   simpleUsage
+  echo -e
   echo -e "CROMWELL_URL=$CROMWELL_URL"
   echo
   echo -e "If no workflow-id is specified then the last submitted workflow-id is assumed."
@@ -218,7 +261,6 @@ trap at_exit EXIT
 
 function populateWorkflowIdAndServerUrl()
 {
-  
   local userSpecifiedId=$1
 
   # If the user specified a negative number, get the nth last workflow:
@@ -252,7 +294,8 @@ function populateWorkflowIdAndServerUrl()
 # Submit a workflow and arguments to the Cromwell Server
 
 function submit() 
-{ 
+{
+  turtle
   assertCanCommunicateWithServer $CROMWELL_URL
 
   local response=$(curl --connect-timeout $CURL_CONNECT_TIMEOUT -s -F workflowSource=@${1}  ${2:+ -F workflowInputs=@${2}} ${3:+ -F workflowOptions=@${3}} ${4:+ -F workflowDependencies=@${4}} ${CROMWELL_URL}/api/workflows/v1)
@@ -276,6 +319,7 @@ function submit()
 # Check the status of a Cromwell job UUID
 function status()
 {
+
   local retVal=0
 
   assertCanCommunicateWithServer $2
@@ -287,6 +331,12 @@ function status()
   r=$?
   [[ $r -eq 0 ]] && retVal=1
 
+  if [[ $retVal -eq 1 ]]; then
+    turtle "dead"
+  else
+    turtle
+  fi
+
   cat $f | jq . 
   checkPipeStatus "Could not read tmp file JSON data." "Could not parse JSON output from cromwell server."
 
@@ -300,6 +350,7 @@ function status()
 # Get the logs of a Cromwell job UUID
 function logs() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   curl --connect-timeout $CURL_CONNECT_TIMEOUT -s ${2}/api/workflows/v1/${1}/logs | jq . 
   checkPipeStatus "Could not connect to Cromwell server." "Could not parse JSON output from cromwell server."
@@ -309,6 +360,7 @@ function logs()
 # Get the metadata for a Cromwell job UUID
 function metadata() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   curl --connect-timeout $CURL_CONNECT_TIMEOUT --compressed -s ${2}/api/workflows/v1/${1}/metadata?${CROMWELL_METADATA_PARAMETERS} | jq . 
   checkPipeStatus "Could not connect to Cromwell server." "Could not parse JSON output from cromwell server."
@@ -318,6 +370,7 @@ function metadata()
 # Get the metadata in condensed form for a Cromwell job UUID
 function slim-metadata() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   curl --connect-timeout $CURL_CONNECT_TIMEOUT --compressed -s "${2}/api/workflows/v1/$1/metadata?includeKey=executionStatus&includeKey=backendStatus" | jq .
   checkPipeStatus "Could not connect to Cromwell server." "Could not parse JSON output from cromwell server."
@@ -327,6 +380,7 @@ function slim-metadata()
 # Get the status of the given job and how many times it was run
 function execution-status-count() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   f=$( makeTemp )
   curl --connect-timeout $CURL_CONNECT_TIMEOUT --compressed -s ${2}/api/workflows/v1/$1/metadata?${CROMWELL_METADATA_PARAMETERS} > $f
@@ -348,6 +402,7 @@ function execution-status-count()
 # Bring up a browser window to view timing information on the job.
 function timing() 
 {
+  turtle
   echo "Opening timing information in a web browser for job ID: ${1}"
   open ${2}/api/workflows/v1/${1}/timing
   return $?
@@ -356,6 +411,7 @@ function timing()
 # Cancel a running job.
 function abort() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   response=$(curl --connect-timeout $CURL_CONNECT_TIMEOUT -X POST --header "Content-Type: application/json" --header "Accept: application/json" "${2}/api/workflows/v1/${1}/abort")
   local r=$?
@@ -366,7 +422,7 @@ function abort()
 # List all jobs submitted in ${CROMWELL_SUBMISSIONS_FILE}
 function list()
 {
-
+  turtle
   local doColor=false
   local doUpdate=false
 
@@ -449,6 +505,7 @@ function list()
 #     output
 function list-outputs() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   local id=$1
   local cromwellServer=$2
@@ -476,6 +533,7 @@ function list-outputs()
 # Get the root log folder from the cloud and put it in the metadata folder for this run
 function fetch-logs() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   local id=$1
   local cromwellServer=$2
@@ -511,6 +569,7 @@ function fetch-logs()
 # Includes all logs and output files
 function fetch-all() 
 {
+  turtle
   assertCanCommunicateWithServer $2
   local id=$1
   local cromwellServer=$2
@@ -637,7 +696,7 @@ if ${ISCALLEDBYUSER} ; then
 
   # Special case: notify
   if [[ "${SUB_COMMAND}" == "notify" ]] ; then
-
+    turtle
     # Is the next argument our workflow ID?
     # Workflow IDs are standard UUIDs:
     if [[ "${1}" =~ ^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$ ]] ; then