Skip to content

Compound page react wrapper #577

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
alimourey wants to merge 15 commits into
base: master
Choose a base branch
from
Draft

Compound page react wrapper #577

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
15 commits
Select commit Hold shift + click to select a range
9221bee
WIP adding react wrapper to compound page. Also deleted legacy dose c…
alimourey Feb 3, 2026
0a44e86
wip
alimourey Feb 3, 2026
9e05491
wip
alimourey Feb 3, 2026
657ff1e
wip
alimourey Feb 4, 2026
f7b1ac3
WIP updating compound page to fetch sensitivity summary from frontend…
alimourey Feb 4, 2026
446c857
wip
alimourey Feb 4, 2026
59d8bee
Delete some older no longer used code
alimourey Feb 4, 2026
b652f93
Delete more old code
alimourey Feb 4, 2026
fa17888
Delete old index and executive html
alimourey Feb 4, 2026
7e81b84
wip
alimourey Feb 4, 2026
41f0551
wip
alimourey Feb 4, 2026
a0b3873
WIP
alimourey Feb 4, 2026
2919b6d
wip
alimourey Feb 4, 2026
11619a7
wip
alimourey Feb 4, 2026
f36f5c8
Fix puright
alimourey Feb 5, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
36 changes: 18 additions & 18 deletions frontend/packages/@depmap/api/src/legacyPortalAPI/resources/compound.ts
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,27 +1,10 @@
import {
CompoundDoseCurveData,
CurveParams,
CurvePlotPoints,
CompoundSummaryResponse,
DRCDatasetOptions,
} from "@depmap/types";
import { uri } from "../../uriTemplateTag";
import { getJson } from "../client";

export function getDoseResponsePoints(
datasetName: string,
depmapId: string,
compoundLabel: string
) {
return getJson<{
curve_params: Array<CurveParams>;
points: Array<CurvePlotPoints>;
}>(uri`/compound/dosecurve/${datasetName}/${depmapId}/${compoundLabel}`);
}

export function getDoseResponseTable(datasetName: string, xrefFull: string) {
return getJson<any>(uri`/compound/dosetable/${datasetName}/${xrefFull}`);
}

export function getCompoundDoseCurveData(
compoundId: string,
drcDatasetLabel: string,
Expand Down Expand Up @@ -53,3 +36,20 @@ export function getPrioritizedDataset(
params
);
}

export function getCompoundSummary(
compoundId: string,
compoundName: string,
compoundDatasetIds: string[] = []
): Promise<CompoundSummaryResponse> {
const params = {
compound_id: compoundId,
compound_label: compoundName,
compound_dataset_ids: compoundDatasetIds,
};

return getJson<CompoundSummaryResponse>(
`/api/compound/compound_summary`,
params
);
}
6 changes: 0 additions & 6 deletions frontend/packages/@depmap/globals/src/globals.ts
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -169,15 +169,9 @@ function polyfillProxy() {
"saveNewContext",
"editContext",
"repairContent",
"initPredictiveTab",
"initDoseResponseTab",
"initWideTable",
"initEntitySummary",
"initSublineagePlot",
"initCelfiePage",
"initEnrichmentTile",
"initHeatmapTile",
"initStructureAndDetailTile",
].forEach((prop) => {
Object.defineProperty(proxy, prop, {
get() {
Expand Down
22 changes: 22 additions & 0 deletions frontend/packages/@depmap/types/src/compounds.ts
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -67,3 +67,25 @@ export interface DRCDatasetOptions {
drc_dataset_label: string;
log_auc_dataset_given_id?: string;
}

export type DatasetOption = {
dataset: string;
entity: number;
id: string;
label: string;
};

export interface SensitivityTabSummary {
initialSelectedDataset: DatasetOption;
size_biom_enum_name: string;
color: string;
figure: { name: number };
show_auc_message: boolean;
summary_options: DatasetOption[];
}

export interface CompoundSummaryResponse {
sensitivity_summary: SensitivityTabSummary | null;
heatmap_dose_curve_options: DRCDatasetOptions[];
correlation_analysis_options: DRCDatasetOptions[];
}
49 changes: 49 additions & 0 deletions frontend/packages/portal-frontend/src/apps/compoundPage.tsx
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,49 @@
import "src/public-path";
import React from "react";
import ReactDOM from "react-dom";
import ErrorBoundary from "src/common/components/ErrorBoundary";
import CompoundPage from "src/compound/components/CompoundPage";

const container = document.getElementById("react-compound-page-root");
const dataElement = document.getElementById("react-compound-page-data");
if (!dataElement || !dataElement.textContent) {
throw new Error(
`Expected a DOM element like <script type="application/json">{ ... }</script>'`
);
}

const data = JSON.parse(dataElement.textContent);

const {
isMobile,
order,
compoundName,
compoundId,
aka, // Comma separated string of compound aliases
compoundUnits,
predictabilityCustomDownloadsLink,
predictabilityMethodologyLink,
hasDatasets,
showPredictabilityTab,
} = data;

const App = () => {
return (
<ErrorBoundary>
<CompoundPage
isMobile={isMobile}
order={order}
compoundName={compoundName}
compoundId={compoundId}
aka={aka}
compoundUnits={compoundUnits}
predictabilityCustomDownloadsLink={predictabilityCustomDownloadsLink}
predictabilityMethodologyLink={predictabilityMethodologyLink}
hasDatasets={hasDatasets}
showPredictabilityTab={showPredictabilityTab}
/>
</ErrorBoundary>
);
};

ReactDOM.render(<App />, container);
3 changes: 1 addition & 2 deletions frontend/packages/portal-frontend/src/celfie/components/CelfiePage.tsx
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ import React, {
useCallback,
useMemo,
} from "react";
import { TopFeatureValue } from "@depmap/types";
import { DatasetOption, TopFeatureValue } from "@depmap/types";
import { NetworkOverrepresentation } from "src/celfie/components/NetworkOverrepresentation";
import {
ConstellationGraphInputs,
Expand All @@ -30,7 +30,6 @@ import { Option } from "src/common/models/utilities";
import { UnivariateAssociationsParams, ComputeResponse } from "@depmap/compute";
import { ProgressTracker } from "@depmap/common-components";
import * as Plotly from "plotly.js";
import { DatasetOption } from "src/entity/components/EntitySummary";
import { ColorByOption } from "src/celfie/models/celfie";
import HelpModal from "src/common/components/HelpModal";
import { getNumGenes } from "src/celfie/utilities/celfieUtils";
Expand Down
80 changes: 80 additions & 0 deletions frontend/packages/portal-frontend/src/compound/components/CompoundPage.tsx
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,80 @@
import React from "react";
import styles from "../styles/CompoundPage.scss";
import CompoundPageTabs from "./CompoundPageTabs";
import CompoundPageHeader from "./CompoundPageHeader";
import { useCompoundPageData } from "../hooks/useCompoundPageData";
import { enabledFeatures } from "@depmap/globals";

interface Props {
isMobile: boolean;
order: any;
compoundName: string;
compoundId: string;
aka: string; // Comma separated list of compound aliases
compoundUnits: string;
predictabilityCustomDownloadsLink: string;
predictabilityMethodologyLink: string;
hasDatasets: boolean;
showPredictabilityTab: boolean;
}

const CompoundPage = ({
isMobile,
order,
compoundName,
compoundId,
aka, // Comma separated string of compound aliases
compoundUnits,
predictabilityCustomDownloadsLink,
predictabilityMethodologyLink,
hasDatasets,
showPredictabilityTab,
}: Props) => {
const {
isLoading,
sensitivitySummary,
initialSelectedDataset,
doseCurveOptions,
heatmapOptions,
correlationAnalysisOptions,
showEnrichedLineages,
} = useCompoundPageData(compoundId, compoundName);

return (
<div className={styles.CompoundPage}>
<CompoundPageHeader compoundName={compoundName} aka={aka} />
{!isLoading && (
<CompoundPageTabs
isMobile={isMobile}
order={order}
compoundName={compoundName}
compoundId={compoundId}
compoundUnits={compoundUnits}
predictabilityCustomDownloadsLink={predictabilityCustomDownloadsLink}
predictabilityMethodologyLink={predictabilityMethodologyLink}
hasDatasets={hasDatasets}
showPredictabilityTab={showPredictabilityTab}
showDoseCurvesTab={
doseCurveOptions.length > 0 && enabledFeatures.new_dose_curves_tab
}
showHeatmapTab={
heatmapOptions.length > 0 && enabledFeatures.heatmap_tab
}
showCorrelationAnalysisTab={correlationAnalysisOptions.length > 0}
showEnrichedLineages={showEnrichedLineages}
showCorrelatedDependenciesTile={
enabledFeatures.compound_correlated_dependencies_tile
}
showRelatedCompoundTiles={enabledFeatures.related_compounds_tile}
doseCurveTabOptions={doseCurveOptions}
heatmapTabOptions={heatmapOptions}
correlationAnalysisOptions={correlationAnalysisOptions}
sensitivitySummary={sensitivitySummary}
initialSelectedDataset={initialSelectedDataset}
/>
)}
</div>
);
};

export default CompoundPage;
26 changes: 26 additions & 0 deletions frontend/packages/portal-frontend/src/compound/components/CompoundPageHeader.tsx
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,26 @@
import React from "react";
import styles from "../styles/CompoundPage.scss";

interface Props {
compoundName: string;
aka: string;
}

const CompoundPageHeader = ({ compoundName, aka }: Props): JSX.Element => {
return (
<div className={styles.header}>
<div className={styles.symbol}>{compoundName}</div>
<div className={styles.headerInfoContainer}>
<div className={styles.headerInfoContainer}>
{aka && (
<div className={styles.otherInfo}>
Also known as: <span className={styles.infoContent}>{aka}</span>
</div>
)}
</div>
</div>
</div>
);
};

export default CompoundPageHeader;
109 changes: 109 additions & 0 deletions frontend/packages/portal-frontend/src/compound/components/CompoundPageOverview.tsx
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,109 @@
import React from "react";
import AsyncTile from "src/common/components/AsyncTile";
import { CardContainer, CardColumn } from "src/common/components/Card";

interface Props {
compoundName: string;
showPredictability: boolean;
showHeatmap: boolean;
showEnrichedLineages: boolean;
showCorrelatedDependenciesTile: boolean;
showRelatedCompoundsTile: boolean;
orderedTiles: [CompoundTileTypeEnum, number][][];
hasDatasets: boolean;
isMobile: boolean;
}

export enum CompoundTileTypeEnum {
Selectivity = "selectivity",
Predictability = "predictability",
Description = "description",
Sensitivity = "sensitivity",
Availability = "availability",
Celfie = "celfie",
Heatmap = "heatmap",
Correlated_dependencies = "correlated_dependencies",
Related_compounds = "related_compounds",
Correlated_expression = "correlated_expression",
}
/* match to portal-backend tile enum */

const CompoundPageOverview = ({
compoundName,
showPredictability,
showHeatmap,
showEnrichedLineages,
showCorrelatedDependenciesTile,
showRelatedCompoundsTile,
orderedTiles,
hasDatasets,
isMobile,
}: Props) => {
// We have an array of arrays. Each child array represents the tiles of a single column. Each tile is a tuple,
// with the name of the tile (i.e. essentiality) at index 0

const shouldShowTile = (tile: [CompoundTileTypeEnum, number]) => {
switch (tile[0]) {
case CompoundTileTypeEnum.Heatmap:
return showHeatmap;
case CompoundTileTypeEnum.Selectivity:
return showEnrichedLineages;
case CompoundTileTypeEnum.Predictability:
return showPredictability;
case CompoundTileTypeEnum.Correlated_dependencies:
return showCorrelatedDependenciesTile;
case CompoundTileTypeEnum.Related_compounds:
return showRelatedCompoundsTile;

default:
return true;
}
};

const getTileIfOkayToShow = (
tile: [CompoundTileTypeEnum, number],
key: [CompoundTileTypeEnum, number]
) => {
let resultTile: JSX.Element | null = (
<AsyncTile
key={key[0]}
url={`/tile/compound/${tile[0]}/${compoundName}`}
/>
);

// Match tiles with tabs... On occasion we have to show a tab, but not the tile (i.e. Celfie tab but not tile for HNF1B)
if (!shouldShowTile(tile)) {
resultTile = null;
}

return resultTile;
};

return (
<>
{isMobile ? (
<CardContainer>
<CardColumn>
{orderedTiles.map((column) => (
<div key={column.toString()}>
{column.map((tile) =>
hasDatasets ? getTileIfOkayToShow(tile, tile) : <></>
)}
</div>
))}
</CardColumn>
</CardContainer>
) : (
<CardContainer>
{orderedTiles.map((column) => (
<CardColumn key={column.toString()}>
{column.map((tile) => getTileIfOkayToShow(tile, tile))}
</CardColumn>
))}
</CardContainer>
)}
</>
);
};

export default CompoundPageOverview;
Loading