hotfix for Tasks0506 cromwell compliance (#187)

epiercehoffman · web-flow · commit 00f1e7c63762 · 2021-06-15T17:41:14.000-04:00
diff --git a/wdl/Tasks0506.wdl b/wdl/Tasks0506.wdl
@@ -12,7 +12,7 @@ import "Structs.wdl"
 task ZcatCompressedFiles {
   input {
     Array[File] shards
-    String outfile_name
+    String? outfile_name
     String? filter_command
     String sv_base_mini_docker
     RuntimeAttr? runtime_attr_override
@@ -60,7 +60,7 @@ task ZcatCompressedFiles {
   }
 
   output {
-    File outfile=outfile_name
+    File outfile=output_file_name
   }
 }
 

Original file line number	Diff line number	Diff line change
`@@ -12,7 +12,7 @@ import "Structs.wdl"`
`12`	`12`	`task ZcatCompressedFiles {`
`13`	`13`	`input {`
`14`	`14`	`Array[File] shards`
`15`		`- String outfile_name`
	`15`	`+ String? outfile_name`
`16`	`16`	`String? filter_command`
`17`	`17`	`String sv_base_mini_docker`
`18`	`18`	`RuntimeAttr? runtime_attr_override`
`@@ -60,7 +60,7 @@ task ZcatCompressedFiles {`
`60`	`60`	`}`
`61`	`61`
`62`	`62`	`output {`
`63`		`- File outfile=outfile_name`
	`63`	`+ File outfile=output_file_name`
`64`	`64`	`}`
`65`	`65`	`}`
`66`	`66`