Update expression to access male PE/SR stats for male-only chrX events (#242)

epiercehoffman · web-flow · commit 12be8a7bf3d6 · 2021-10-14T17:22:21.000-04:00
diff --git a/wdl/PETestChromosome.wdl b/wdl/PETestChromosome.wdl
@@ -80,7 +80,7 @@ workflow PETestChromosome {
           chrom = chrom,
           sv_pipeline_docker = sv_pipeline_docker,
           runtime_attr_override = runtime_attr_merge_allo,
-          male_only_expr = "females.log_pval.isnull()"
+          male_only_expr = "females.log_pval == 0"
       }
     }
     if (!allosome) {
diff --git a/wdl/SRTestChromosome.wdl b/wdl/SRTestChromosome.wdl
@@ -81,7 +81,7 @@ workflow SRTestChromosome {
           chrom = chrom,
           runtime_attr_override = runtime_attr_merge_allo,
           sv_pipeline_docker = sv_pipeline_docker,
-          male_only_expr = "females.log_pval.isnull()"
+          male_only_expr = "females.log_pval == 0"
       }
     } 
 

Original file line number	Diff line number	Diff line change
`@@ -80,7 +80,7 @@ workflow PETestChromosome {`
`80`	`80`	`chrom = chrom,`
`81`	`81`	`sv_pipeline_docker = sv_pipeline_docker,`
`82`	`82`	`runtime_attr_override = runtime_attr_merge_allo,`
`83`		`- male_only_expr = "females.log_pval.isnull()"`
	`83`	`+ male_only_expr = "females.log_pval == 0"`
`84`	`84`	`}`
`85`	`85`	`}`
`86`	`86`	`if (!allosome) {`
Original file line number	Diff line number	Diff line change
`@@ -81,7 +81,7 @@ workflow SRTestChromosome {`
`81`	`81`	`chrom = chrom,`
`82`	`82`	`runtime_attr_override = runtime_attr_merge_allo,`
`83`	`83`	`sv_pipeline_docker = sv_pipeline_docker,`
`84`		`- male_only_expr = "females.log_pval.isnull()"`
	`84`	`+ male_only_expr = "females.log_pval == 0"`
`85`	`85`	`}`
`86`	`86`	`}`
`87`	`87`