XfBatchEffect.GetFreqTable remove bgzip for already-gzipped file (#270)

epiercehoffman · web-flow · commit 629d3828c670 · 2021-12-03T12:45:57.000-05:00
diff --git a/wdl/Module07XfBatchEffect.wdl b/wdl/Module07XfBatchEffect.wdl
@@ -308,7 +308,6 @@ task GetFreqTable {
     | sed 's/^name/\#VID/g' \
     | gzip -c \
     > "~{prefix}.frequencies.allPops.txt.gz"
-    bgzip "~{prefix}.frequencies.txt"
   >>>
 
   output {
