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AnnotateVCF gnomad4 bed file question #935
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gatk-sv/inputs/values/resources_hg38.json
Line 30 in 7eb2af1
| "external_af_ref_bed" : "gs://gatk-sv-resources-public/gnomad_AF/gnomad_v4_SV.Freq.tsv.gz", |
The gnomad v4 bed file has a name column with values the have the format gnomAD-SV_v3_BND_chr1_1a45f73a for example. This seems to be used in the INFO field when running the AnnotateVCF workflow. The resulting VCF file's INFO field looks like: gnomad_v4.1_sv_SVID=gnomAD-SV_v3_BND_chr1_1a45f73a.
Can someone explain the significance here for the gnomAD-SV_v3 prefix? Is this intended? I found it confusing as this is for gnomadv4 annotations. Please let me know if I'm missing something. Thanks!
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