genomeshader/.gitignore at main · broadinstitute/genomeshader · GitHub

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/target
/scratch
/venv
.vscode/
*.fa
*.bam
*.bai
.ipynb_checkpoints/
python/genomeshader/__pycache__/
__pycache__/
*.so
*.ipynb
genomeshader_runs/
# Stray node tooling — the headless tests use the Python playwright package.
node_modules/
package.json
package-lock.json

# Local research journal — never committed
JOURNAL.md
JOURNAL/

# Downloaded real datasets (Pf7 etc.) — never commit
fiss_downloads/

# htslib HTS_IDX_SAVE_REMOTE copies of remote indexes (dropped in cwd)
/*.tbi
/*.csi
*.pf7.vcf.gz.tbi

# Debug logs (GenomeShader debug=True)
genomeshader_logs/
genomeshader_debug_*.log

# Path-dep crate; do not commit its local cargo output
/vendor/rust-htslib/target
# Build artifacts — wheels/sdists are never checked in (build with maturin)
/dist/
/wheels/
*.whl
*.tar.gz
/.venv