4.1>4.1.1

Author: ch-kr

browser/help/topics/v4-browser-hts.md

@@ -5,15 +5,15 @@ title: 'gnomAD v4 Browser Hail Tables'
 
 In addition to our [variants tables](/downloads#v4-variants), we release four data tables underlying the gnomAD browser. These tables enable our users to more easily incorporate gnomAD data into external pipelines and analyses in a manner consistent with what they see in the browser.
 
-## gnomAD v4.1 exome/genome/joint short variant table
+## gnomAD v4.1.1 exome/genome/joint short variant table
 
 To convert the standard gnomAD short variant (SNV/indel) release tables into a format more suitable for browser display, we join the exome, genome, and joint tables on locus/allele to create a single table. This process ensures that they share the same site-level annotations, thus saving space and optimizing database/API queries. Additionally, allele counts and frequencies are structured in a JSON-like format that is more easily consumable by web applications. The table may also include subset data not visible in the browser.
 
 Each row (i.e., variant) in this table will have distinct allele frequency information and quality metrics depending whether it was present in the exome or genome callsets but will share common annotations such as [VEP annotations](https://useast.ensembl.org/info/docs/tools/vep/index.html) and _in silico_ predictors.
 
 The script for how this table is created can be found [here](https://github.com/broadinstitute/gnomad-browser/blob/main/data-pipeline/src/data_pipeline/pipelines/gnomad_v4_variants.py).
 
-## gnomAD v4.1/v2.1 genes tables
+## gnomAD v4.1.1/v2.1 genes tables
 
 These tables underlie the gene models data seen in the browser, which contains detailed information on exon-coding regions, transcripts, identifiers, gene constraint, and co-occurrence data. The data from these tables are derived from [GENCODE](https://www.gencodegenes.org/human/release_39.html), the [HUGO Gene Nomenclature Committee (HGNC)](https://www.genenames.org/), [MANE transcripts](https://www.ncbi.nlm.nih.gov/refseq/MANE/), [GTEx](https://gtexportal.org/home/) (coming soon), and from gnomAD secondary analyses.
 
@@ -27,7 +27,7 @@ The scripts for how these tables are created can be found [here](https://github.
 
 # Browser Hail Table Field Descriptions
 
-#### gnomAD v4.1 browser variant Hail Table annotations
+#### gnomAD v4.1.1 browser variant Hail Table annotations
 
 Global fields:
 
@@ -154,7 +154,7 @@ Row fields:
     - `repeat_subunit_length`: The number of residues in the repeat subunit.
   - `alt`: Struct containing information about the alternate allele. Contains the same fields as `ref` above.
 
-#### gnomAD v4.1. browser gene models Hail Table annotations
+#### gnomAD v4.1.1 browser gene models Hail Table annotations
 
 Global fields: