Removing teh sort that I added because it's not needed. #5974
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Continuous integration test of any branch. | |
| name: CI | |
| on: | |
| push: | |
| branches-ignore: | |
| - main | |
| jobs: | |
| # Run Python tests on Github runner | |
| tox_test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.13] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: Setup Environment | |
| uses: ./.github/actions/setup-environment # Path to your composite action | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| conda-python-version: '3.12' # Keep this specific if miniwdl needs 3.12 | |
| - name: Test with tox | |
| run: tox | |
| # Send Slack message on workflow failure | |
| - name: Slack Failure Notification | |
| if: failure() | |
| uses: rtCamp/action-slack-notify@v2.0.2 | |
| env: | |
| SLACK_COLOR: '#DF5A49' | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
| SLACK_ICON: https://github.com/broadinstitute/long-read-pipelines/blob/main/.github/workflows/dnabad.png?raw=true | |
| SLACK_USERNAME: long-read-pipelines | |
| # Run WDL tests on self-hosted runner | |
| branch_test: | |
| needs: tox_test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Continuous integration test suite | |
| run: | | |
| echo 'Test temporarily disabled.' | |
| # Send Slack message on workflow failure | |
| - name: Slack Failure Notification | |
| if: failure() | |
| uses: rtCamp/action-slack-notify@v2.0.2 | |
| env: | |
| SLACK_COLOR: '#DF5A49' | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
| SLACK_ICON: https://github.com/broadinstitute/long-read-pipelines/blob/main/.github/workflows/dnabad.png?raw=true | |
| SLACK_USERNAME: long-read-pipelines | |
| # Send Slack message on workflow success | |
| - name: Slack Success Notification | |
| if: success() | |
| uses: rtCamp/action-slack-notify@v2.0.2 | |
| env: | |
| SLACK_COLOR: '#50D9C9' | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
| SLACK_ICON: https://github.com/broadinstitute/long-read-pipelines/blob/main/.github/workflows/dnagood.png?raw=true | |
| SLACK_USERNAME: long-read-pipelines |