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Removed preemption from HC_simplified, ubuntu update.
- Updated HaplotypeCaller_simplified workflows to be non-preemptible by default. This should save some money. - Updated ubuntu 19.10 image to ubuntu 24.04.
1 parent 132cae4 commit 03c9c6c

2 files changed

Lines changed: 3 additions & 3 deletions

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wdl/tasks/Utility/Utils.wdl

Lines changed: 1 addition & 1 deletion
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@@ -1874,7 +1874,7 @@ task GetCurrentTimestampString {
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# ------------------------------------------------
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# Runtime settings:
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runtime {
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docker: "ubuntu:19.10"
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docker: "ubuntu:24.04"
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memory: "512 MB"
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disks: "local-disk 10 HDD"
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bootDiskSizeGb: 15

wdl/tasks/VariantCalling/HaplotypeCaller_Simplified.wdl

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@@ -235,7 +235,7 @@ task HaplotypeCaller_GATK4_VCF {
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mem_gb: 16,
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disk_gb: disk_size,
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boot_disk_gb: 25,
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preemptible_tries: 2,
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preemptible_tries: 0,
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max_retries: 1,
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docker: "us.gcr.io/broad-gatk/gatk:4.5.0.0"
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}
@@ -301,7 +301,7 @@ task ReblockGVCF {
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mem_gb: 4,
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disk_gb: disk_size,
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boot_disk_gb: 25,
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preemptible_tries: 2,
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preemptible_tries: 0,
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max_retries: 1,
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docker: "broadinstitute/gatk-nightly:2024-04-16-4.5.0.0-25-g986cb1549-NIGHTLY-SNAPSHOT"
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}

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