revise outputprefix

hangsuUNC · hangsuUNC · commit 0480200f158f · 2024-11-22T17:11:40.000-05:00
diff --git a/wdl/pipelines/TechAgnostic/Phasing/Shapeit5_switch.wdl b/wdl/pipelines/TechAgnostic/Phasing/Shapeit5_switch.wdl
@@ -17,7 +17,7 @@ workflow Shapeit5_switch{
     }
     
     scatter (region in region_list){
-        call switch{input: truth_bcf=truthvcf, truth_bcf_index=truthvcf_index, test_bcf= testvcf, test_bcf_index = testvcf_index, region = region, extra_args=extra_args, outputprefix = output_prefix, num_threads=nthreads}
+        call switch{input: truth_bcf=truthvcf, truth_bcf_index=truthvcf_index, test_bcf= testvcf, test_bcf_index = testvcf_index, region = region, extra_args=extra_args, outputprefix = output_prefix + "." + region, num_threads=nthreads}
     }
     
     output{

Original file line number	Diff line number	Diff line change
`@@ -17,7 +17,7 @@ workflow Shapeit5_switch{`
`17`	`17`	`}`
`18`	`18`
`19`	`19`	`scatter (region in region_list){`
`20`		`- call switch{input: truth_bcf=truthvcf, truth_bcf_index=truthvcf_index, test_bcf= testvcf, test_bcf_index = testvcf_index, region = region, extra_args=extra_args, outputprefix = output_prefix, num_threads=nthreads}`
	`20`	`+ call switch{input: truth_bcf=truthvcf, truth_bcf_index=truthvcf_index, test_bcf= testvcf, test_bcf_index = testvcf_index, region = region, extra_args=extra_args, outputprefix = output_prefix + "." + region, num_threads=nthreads}`
`21`	`21`	`}`
`22`	`22`
`23`	`23`	`output{`