Commit 1108d7e
committed
Added simplified version of SRWholeGenome.
- Added `SRWholeGenome_Simplified.wdl` which uses a simplified version
of the HaplotypeCaller workflow to run faster. This was accomplished
by removing the scatter by interval. This workflow will not scatter
by interval when performing variant calling. This is OK for small
genomes / organisms.
- Added `HaplotypeCaller_Simplified.wdl` which performs germline variant
calling on an input bam file without any scattering.1 parent b25ec2c commit 1108d7e
File tree
2 files changed
+868
-0
lines changed- wdl
- pipelines/ILMN/VariantCalling
- tasks/VariantCalling
2 files changed
+868
-0
lines changed
0 commit comments