some more resource optimization

SHuang-Broad · SHuang-Broad · commit 4522540fc2b0 · 2025-02-19T22:42:01.000-05:00
diff --git a/wdl/tasks/Utility/FastqUtils.wdl b/wdl/tasks/Utility/FastqUtils.wdl
@@ -48,7 +48,7 @@ task Stats {
         mem_gb:                16,
         disk_gb:               disk_size,
         boot_disk_gb:          10,
-        preemptible_tries:     0,
+        preemptible_tries:     1,
         max_retries:           0,
         docker:                "us.gcr.io/broad-dsp-lrma/lr-seqkit:2.4.0"
     }
diff --git a/wdl/tasks/Utility/ReadLengths.wdl b/wdl/tasks/Utility/ReadLengths.wdl
@@ -119,7 +119,7 @@ task GetNumReadsAndShorts {
         Float num_shorts = read_float("shorts.txt")
         File rl_bz2 = "~{prefix}.txt.bz2"
     }
-    runtime {cpu: 1 memory: "4 GiB" disks: "local-disk 100 HDD" docker: "gcr.io/cloud-marketplace/google/ubuntu2004:latest"}
+    runtime {cpu: 1 memory: "4 GiB" disks: "local-disk 100 HDD" preemptible_tries: 1 docker: "gcr.io/cloud-marketplace/google/ubuntu2004:latest"}
 }
 
 task Dyst {

Original file line number	Diff line number	Diff line change
`@@ -48,7 +48,7 @@ task Stats {`
`48`	`48`	`mem_gb: 16,`
`49`	`49`	`disk_gb: disk_size,`
`50`	`50`	`boot_disk_gb: 10,`
`51`		`- preemptible_tries: 0,`
	`51`	`+ preemptible_tries: 1,`
`52`	`52`	`max_retries: 0,`
`53`	`53`	`docker: "us.gcr.io/broad-dsp-lrma/lr-seqkit:2.4.0"`
`54`	`54`	`}`
Original file line number	Diff line number	Diff line change
`@@ -119,7 +119,7 @@ task GetNumReadsAndShorts {`
`119`	`119`	`Float num_shorts = read_float("shorts.txt")`
`120`	`120`	`File rl_bz2 = "~{prefix}.txt.bz2"`
`121`	`121`	`}`
`122`		`- runtime {cpu: 1 memory: "4 GiB" disks: "local-disk 100 HDD" docker: "gcr.io/cloud-marketplace/google/ubuntu2004:latest"}`
	`122`	`+ runtime {cpu: 1 memory: "4 GiB" disks: "local-disk 100 HDD" preemptible_tries: 1 docker: "gcr.io/cloud-marketplace/google/ubuntu2004:latest"}`
`123`	`123`	`}`
`124`	`124`
`125`	`125`	`task Dyst {`