c949a60dcc3caf33547348f923216aba

Author: SHuang-Broad

wdl/tasks/VariantCalling/DeepVariant.wdl

@@ -63,8 +63,9 @@ workflow Run {
             Boolean is_t2t_shard8 = length(how_to_shard_wg_for_calling) < 20 && shard_id == "9_15"
             Boolean is_38_chr1  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "1-p"
             Boolean is_38_shard3  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "11-q_17-q"
+            Boolean is_38_1q_17p = length(how_to_shard_wg_for_calling) > 20 && shard_id == "1-q_17-p"
 
-            Boolean pay_toll = true # is_t2t_chrX || is_38_chr1 || is_t2t_shard8 || is_38_shard3
+            Boolean pay_toll = is_t2t_chrX || is_38_chr1 || is_t2t_shard8 || is_38_shard3 || is_38_1q_17p # true #
             Int use_this_memory = if (pay_toll) then 6*dv_threads else dv_memory
             call DV as DeepV {
                 input: