925f72b57bca6b9c8c80063ef0b46185

Author: SHuang-Broad

wdl/tasks/VariantCalling/DeepVariant.wdl

@@ -70,12 +70,14 @@ workflow Run {
             Boolean is_38_shard3  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "11-q_17-q"
 
             Boolean is_38_10 = length(how_to_shard_wg_for_calling) > 20 && shard_id == "10"
-            Boolean is_38_13_16p  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "13_16-p"
+            Boolean is_38_14_18 = length(how_to_shard_wg_for_calling) > 20 && shard_id == "14-q_18-q"
             Boolean is_38_21_22_y  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "21_22_y"
+            Boolean is_38_3p_6p  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "3-p_6-p"
             Boolean is_38_3q_20q  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "3-q_20-q"
             Boolean is_38_4p_5p_11p  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "4-p_5-p_11-p"
+            Boolean is_38_7q_16q  = length(how_to_shard_wg_for_calling) > 20 && shard_id == "7-q_16-q"
 
-            Boolean is_38_pay_toll_shard = is_38_chr1 || is_38_shard3 || is_38_10 || is_38_13_16p || is_38_21_22_y || is_38_3q_20q || is_38_4p_5p_11p
+            Boolean is_38_pay_toll_shard = is_38_chr1 || is_38_shard3 || is_38_10 || is_38_14_18 || is_38_21_22_y || is_38_3p_6p || is_38_3q_20q || is_38_4p_5p_11p || is_38_7q_16q
 
 
             Boolean pay_toll = is_t2t_pay_toll_shard || is_38_pay_toll_shard # true #