hitting the infamous GCS-htslib error; trying to resolve it with a better docker

SHuang-Broad · SHuang-Broad · commit 6f46089071fa · 2026-02-18T22:17:10.000-05:00
diff --git a/wdl/tasks/Utility/Utils.wdl b/wdl/tasks/Utility/Utils.wdl
@@ -1561,7 +1561,7 @@ task SubsetBam {
         boot_disk_gb:       10,
         preemptible_tries:  2,
         max_retries:        1,
-        docker:             "us.gcr.io/broad-dsp-lrma/lr-basic:0.1.1"
+        docker:             "us.gcr.io/broad-dsp-lrma/lr-gcloud-samtools:0.1.20"
     }
     RuntimeAttr runtime_attr = select_first([runtime_attr_override, default_attr])
     runtime {

Original file line number	Diff line number	Diff line change
`@@ -1561,7 +1561,7 @@ task SubsetBam {`
`1561`	`1561`	`boot_disk_gb: 10,`
`1562`	`1562`	`preemptible_tries: 2,`
`1563`	`1563`	`max_retries: 1,`
`1564`		`- docker: "us.gcr.io/broad-dsp-lrma/lr-basic:0.1.1"`
	`1564`	`+ docker: "us.gcr.io/broad-dsp-lrma/lr-gcloud-samtools:0.1.20"`
`1565`	`1565`	`}`
`1566`	`1566`	`RuntimeAttr runtime_attr = select_first([runtime_attr_override, default_attr])`
`1567`	`1567`	`runtime {`