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Removed runtime attribute override.
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wdl/pipelines/TechAgnostic/VariantCalling/SRJointCallGVCFsWithGenomicsDB_simplified.wdl

Lines changed: 1 addition & 3 deletions
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@@ -173,9 +173,7 @@ workflow SRJointCallGVCFsWithGenomicsDB_simplified {
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ref_dict = ref_map['dict'],
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prefix = prefix + "." + interval_name,
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batch_size = 50,
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# We need to override this because we're not actually sending the GVCF over (just a list)
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# ALSO, we're currently tarring the genomicsDB, so we need at least double the space here, plus some slop:
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runtime_attr_override = object {disk_gb: 10 + (3 * CreateSampleNameMap.total_gvcf_size_gb) + (2 * ceil(size(ref_map['fasta'], "GB"))), preemptible_tries: 0}
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runtime_attr_override = object {preemptible_tries: 0}
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}
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# Joint call

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