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add a marker line to tune
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wdl/tasks/Alignment/AlignReads.wdl

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@@ -50,6 +50,7 @@ task Minimap2 {
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Int desired_cpus = (if('LOCAL'==disk_type) then 32 else 24) * length(reads)
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Int cpus = if max_cpus < desired_cpus then max_cpus else desired_cpus # WDL 1.0 doesn't have a max(,)....
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Int mem = cpus * (if('LOCAL'==disk_type || longer_ont_read_hint) then 6 else 5)
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# if mimimap2 OoM, tune the line above
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Int mm2_threads = cpus - 2
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