Fixing typo in Niare VQSR Joint Calling workflow.

jonn-smith · jonn-smith · commit 82aa0720e556 · 2025-12-09T10:57:48.000-05:00
diff --git a/wdl/pipelines/Z_One_Off_Analyses/SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VQSR.wdl b/wdl/pipelines/Z_One_Off_Analyses/SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VQSR.wdl
@@ -145,7 +145,7 @@ workflow SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VQSR {
                 prefix = prefix + "." + contig,
         }
 
-        call Niare_HC.ApplyVqsrIndel as ApplyVqsrSnp {
+        call Niare_HC.ApplyVqsrSnp as ApplyVqsrSnp {
             input:
                 input_vcf = ApplyVqsrIndel.output_vcf,
                 input_vcf_index = ApplyVqsrIndel.output_vcf_index,

Original file line number	Diff line number	Diff line change
`@@ -145,7 +145,7 @@ workflow SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VQSR {`
`145`	`145`	`prefix = prefix + "." + contig,`
`146`	`146`	`}`
`147`	`147`
`148`		`- call Niare_HC.ApplyVqsrIndel as ApplyVqsrSnp {`
	`148`	`+ call Niare_HC.ApplyVqsrSnp as ApplyVqsrSnp {`
`149`	`149`	`input:`
`150`	`150`	`input_vcf = ApplyVqsrIndel.output_vcf,`
`151`	`151`	`input_vcf_index = ApplyVqsrIndel.output_vcf_index,`