change the docker for PBSV to the old build: quay.io/pacbio/pbsv:2.9.0_1.14_build1

stellaning1120 · stellaning1120 · commit bdc0b30064d3 · 2025-07-23T15:18:59.000-04:00
diff --git a/wdl/tasks/VariantCalling/PBSV.wdl b/wdl/tasks/VariantCalling/PBSV.wdl
@@ -111,7 +111,7 @@ task Discover {
         boot_disk_gb:       25,
         preemptible_tries:  0,
         max_retries:        0,
-        docker:             "us.gcr.io/broad-dsp-lrma/lr-sv:0.1.8"
+        docker:             "quay.io/pacbio/pbsv:2.9.0_1.14_build1"
     }
     RuntimeAttr runtime_attr = select_first([runtime_attr_override, default_attr])
     runtime {

Original file line number	Diff line number	Diff line change
`@@ -111,7 +111,7 @@ task Discover {`
`111`	`111`	`boot_disk_gb: 25,`
`112`	`112`	`preemptible_tries: 0,`
`113`	`113`	`max_retries: 0,`
`114`		`- docker: "us.gcr.io/broad-dsp-lrma/lr-sv:0.1.8"`
	`114`	`+ docker: "quay.io/pacbio/pbsv:2.9.0_1.14_build1"`
`115`	`115`	`}`
`116`	`116`	`RuntimeAttr runtime_attr = select_first([runtime_attr_override, default_attr])`
`117`	`117`	`runtime {`