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avoid '/' in readgroup IDs
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wdl/pipelines/PacBio/Utility/ProcessOnDownsampledMultiReadgroupUBAM.wdl

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -86,7 +86,7 @@ workflow ProcessOnDownsampledMultiReadgroupUBAM {
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uBAM = pair.right,
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readgroup_id = pair.left,
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readgroup_id = sub(pair.left, "/", "|"),
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bam_SM_field = bam_SM_field,
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platform = 'Revio', # non-critical lie, this parameter was used for setting bam size lower bound threshold for failing QC

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