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1 parent 8867834 commit db3b126Copy full SHA for db3b126
wdl/pipelines/ONT/Preprocessing/ONTBasecallDorado.wdl
@@ -192,6 +192,7 @@ task Basecall {
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# Get list of output files:
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DEST_DIR=dorado_bams
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+ mkdir -p $DEST_DIR
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find dorado_output/ -type f -name "*.bam" -print0 | while IFS= read -r -d '' f; do
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base_name=$(basename "$f")
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dest_path="$DEST_DIR/$base_name"
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