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1 parent fabc18e commit f094632Copy full SHA for f094632
wdl/tasks/Utility/Utils.wdl
@@ -1565,6 +1565,8 @@ task InferSampleName {
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export GCS_OAUTH_TOKEN=$(gcloud auth application-default print-access-token)
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export GCLOUD_PROJECT=`gcloud config get-value project`
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+ samtools version
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+
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samtools view -H ~{bam} > header.txt
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if ! grep -q '^@RG' header.txt; then echo "No read group line found!" && exit 1; fi
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