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feat: Add Spectronaut pivot report import with condition setup, inline exp design, and gene symbol splitting #216

feat: Add Spectronaut pivot report import with condition setup, inline exp design, and gene symbol splitting

feat: Add Spectronaut pivot report import with condition setup, inline exp design, and gene symbol splitting #216

Triggered via pull request April 4, 2026 02:57
Status Failure
Total duration 10m 14s
Artifacts 4

check-standard.yaml

on: pull_request
Matrix: R-CMD-check
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8 errors and 12 warnings
windows-latest (release)
Process completed with exit code 1.
windows-latest (release)
R CMD check found ERRORs
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
ubuntu-latest (oldrel-1)
R CMD check found ERRORs
ubuntu-latest (release)
Process completed with exit code 1.
ubuntu-latest (release)
R CMD check found ERRORs
ubuntu-latest (devel)
Process completed with exit code 1.
ubuntu-latest (devel)
R CMD check found ERRORs
windows-latest (release)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3, actions/upload-artifact@v4, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (release)
Functions or methods with usage in Rd file 'extract_protigy_id.Rd' but not in code:
windows-latest (release)
'::' or ':::' import not declared from: 'htmlwidgets'
ubuntu-latest (oldrel-1)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3, actions/upload-artifact@v4, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (oldrel-1)
Functions or methods with usage in Rd file 'extract_protigy_id.Rd' but not in code:
ubuntu-latest (oldrel-1)
'::' or ':::' import not declared from: ‘htmlwidgets’
ubuntu-latest (release)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3, actions/upload-artifact@v4, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (release)
Functions or methods with usage in Rd file 'extract_protigy_id.Rd' but not in code:
ubuntu-latest (release)
'::' or ':::' import not declared from: ‘htmlwidgets’
ubuntu-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v3, actions/upload-artifact@v4, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'extract_protigy_id.Rd' but not in code:
ubuntu-latest (devel)
'::' or ':::' import not declared from: ‘htmlwidgets’

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-rdevel-1-results
245 MB
sha256:d4705a045983b1050fef238fd245719e9ba431e60ef3035d1b571974bc992aea
Linux-X64-roldrel-1-3-results
245 MB
sha256:1e3694d5b9e8f5bc2b262108355a296a70173eda26334a3a46abf6efd549f09a
Linux-X64-rrelease-2-results
245 MB
sha256:2c5f01166920d701a35002498d567beb51faf06334ff1151df5ad085f28197ae
Windows-X64-rrelease-0-results
245 MB
sha256:d83c6bbc6e11cb40da594aace4f8ce9376700cd3e4e8b8f7bed3fd14687dd989