Fix Docker and Snakemake CI workflows

dpark01 · claude · dpark01 · commit 732af2478646 · 2026-01-16T11:34:05.000-05:00
- Use mambaorg/micromamba:2.5.0-debian12-slim (2.0.0-ubuntu24.04 doesn't exist)
- Add --cores 1 to snakemake dry-run (required by workflow)

Co-Authored-By: Claude Opus 4.5 &lt;noreply@anthropic.com&gt;
diff --git a/.github/workflows/snakemake.yml b/.github/workflows/snakemake.yml
@@ -24,5 +24,5 @@ jobs:
       - name: Validate Snakefile syntax (dry-run)
         run: |
           cd workflows
-          snakemake -s Snakefile.example --dry-run --quiet
+          snakemake -s Snakefile.example --dry-run --quiet --cores 1
         shell: micromamba-shell {0}
diff --git a/Dockerfile b/Dockerfile
@@ -1,4 +1,4 @@
-FROM mambaorg/micromamba:2.0.0-ubuntu24.04
+FROM mambaorg/micromamba:2.5.0-debian12-slim
 
 COPY --chown=$MAMBA_USER:$MAMBA_USER environment.yml /tmp/environment.yml
 RUN micromamba install -y -n base -f /tmp/environment.yml && \

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-FROM mambaorg/micromamba:2.0.0-ubuntu24.04`
	`1`	`+FROM mambaorg/micromamba:2.5.0-debian12-slim`
`2`	`2`
`3`	`3`	`COPY --chown=$MAMBA_USER:$MAMBA_USER environment.yml /tmp/environment.yml`
`4`	`4`	`RUN micromamba install -y -n base -f /tmp/environment.yml && \`