Merge pull request #195 from broadinstitute/platform-3.4.0 #1763
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| name: unit tests | |
| # Run the test suite on pushes (incl. merges) to main | |
| # Run the test suite when a PR is opened, pushed to, or reopened | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| jobs: | |
| unit_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up chart-testing | |
| uses: helm/chart-testing-action@v2.6.0 | |
| - name: Add repos | |
| run: | | |
| helm repo add bitnami https://charts.bitnami.com/bitnami | |
| helm repo add seqr-helm https://broadinstitute.github.io/seqr-helm | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Chart Lint | |
| run: ct lint --all | |
| - name: Create folder | |
| run: sudo mkdir -p /var/seqr; sudo chmod 777 /var/seqr | |
| - name: Create kind cluster | |
| uses: helm/kind-action@v1.8.0 | |
| with: | |
| cluster_name: "kind" | |
| config: "kind.yaml" | |
| - name: Run Chart Templating Unit Tests | |
| run: python3 -m unittest unit_test/**/*.py | |
| - name: Test Seqr Platform Chart Installation | |
| run: | | |
| # Add secrets | |
| kubectl create secret generic postgres-secrets --from-literal=password='super-secure-password' | |
| kubectl create secret generic seqr-secrets --from-literal=django_key='securely-generated-key' | |
| kubectl create secret generic clickhouse-secrets \ | |
| --from-literal=admin_password='clickhouseadminpassword' \ | |
| --from-literal=reader_password='clickhousereaderpassword' \ | |
| --from-literal=writer_password='clickhousewriterpassword' | |
| ct install --charts charts/seqr-platform --namespace default --helm-extra-args '--timeout 600s' |