diff --git a/scripts/object_conversion/seurat/README.md b/scripts/object_conversion/seurat/README.md new file mode 100644 index 0000000..07036f9 --- /dev/null +++ b/scripts/object_conversion/seurat/README.md @@ -0,0 +1,9 @@ +[SCP2Seurat.Rmd](https://github.com/broadinstitute/single_cell_portal/blob/master/scripts/object_conversion/seurat/SCP2Seurat.Rmd) - R markdown documenting example Seurat object creation from SCP files + +[SCP2Seurat.nb.html](https://rawcdn.githack.com/broadinstitute/single_cell_portal/eea1917586f0598eb81c24b83[…]21fae2b/scripts/object_conversion/seurat/SCP2Seurat.nb.html) - example run output for above R markdown document demonstrating how to create a Seurat object from SCP files + +[generate_SCP_files.Rmd](https://github.com/broadinstitute/single_cell_portal/blob/master/scripts/object_conversion/seurat/generate_SCP_files.Rmd) - R markdown document of annotated example usage of seurat_scp_convenience.R to generate SCP files from a Seurat object + +[generate_SCP_files.nb.html](https://rawcdn.githack.com/broadinstitute/single_cell_portal/blob/master/scripts/object_conversion/seurat/generate_SCP_files.nb.html) - example run output for above R markdown document demonstrating how to generate SCP files from a Seurat object + +[seurat_scp_convenience.R](https://github.com/broadinstitute/single_cell_portal/blob/master/scripts/object_conversion/seurat/seurat_scp_convenience.R) - code needed for generate_SCP_files.Rmd