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Merge pull request #2230 from broadinstitute/jb-pairwise-de-bugfix
Stop forcing isAuthorDe on pairwise results (SCP-5967)
2 parents 3920d23 + 3e4aaa8 commit aab7c6b

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-4
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app/javascript/components/explore/DifferentialExpressionPanel.jsx

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -762,6 +762,7 @@ export default function DifferentialExpressionPanel({
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countsByLabelForDe={countsByLabelForDe}
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deObjects={deObjects}
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setDeFilePath={setDeFilePath}
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isAuthorDe={isAuthorDe}
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deGroupB={deGroupB}
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setDeGroupB={setDeGroupB}
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hasOneVsRestDe={hasOneVsRestDe}
@@ -851,7 +852,7 @@ export default function DifferentialExpressionPanel({
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bucketId={bucketId}
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deFilePath={deFilePath}
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handleClear={handleClear}
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isAuthorDe={hasPairwiseDe}
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isAuthorDe={isAuthorDe}
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sizeMetric={sizeMetric}
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significanceMetric={significanceMetric}
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deFacets={deFacets}

app/javascript/components/visualization/controls/DifferentialExpressionGroupPicker.jsx

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -320,7 +320,7 @@ export function PairwiseDifferentialExpressionGroupLists({
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export function PairwiseDifferentialExpressionGroupPicker({
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bucketId, clusterName, annotation, deGenes, deGroup, setDeGroup,
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setDeGenes, countsByLabelForDe, deObjects, setDeFilePath,
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deGroupB, setDeGroupB, hasOneVsRestDe, significanceMetric
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deGroupB, setDeGroupB, hasOneVsRestDe, significanceMetric, isAuthorDe
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}) {
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const groups = getLegendSortedLabels(countsByLabelForDe)
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@@ -343,7 +343,6 @@ export function PairwiseDifferentialExpressionGroupPicker({
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setDeFilePath(deFilePath)
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const isAuthorDe = true // SCP doesn't currently automatically compute pairwise DE
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const deGenes = await fetchDeGenes(bucketId, deFilePath, isAuthorDe)
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setDeGenes(deGenes)
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}
@@ -441,7 +440,6 @@ export function OneVsRestDifferentialExpressionGroupPicker({
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const deFilePath = basePath + deFileName
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setDeFilePath(deFilePath)
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const deGenes = await fetchDeGenes(bucketId, deFilePath, isAuthorDe)
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setDeGroup(newGroup)

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