1.92.0

Added

• Support upload, visualization of CSI as BED index file format (#2203)
• API integration for user-submitted differential expression calculations (#2212)
• Scripts for automating scheduled instance restarts (#2216)

Changed

• Simplifying parse_status flag logic (#2210)
• Updates to NeMO-specific ImportService functionality (#2214)

Fixed

• Address issues in automated DE submission for AnnData files (#2213)

1.91.0

Added

• Support upload, visualization of CSI as BED index file format (SCP-5920)
• Improve error UX in study creation (SCP-5933)

Changed

• Remove nightly storage integrity check (#2205)
• Allow sequence file upload for AnnData UX (#2203)
• Updating to scp-ingest-pipeline:1.40.1 (#2207)

1.90.0

Added

• Updated terms of service re: data retention, embargoes (#2195)
• Enhance DE selection UI (feature flagged, #2197)

Changed

• Set max length of study embargoes to 2 years from study creation (#2195)
• Bump net-imap to 0.5.6 (#2199)

1.89.0

Added

• Switching to Google Batch API for ingest processes (#2189)

Changed

• Set maximum machine type for OOM retries of DE jobs to n2d-highmem-16 (#2192)
• Updating to Rails 6.1.7.9 re: CVE-2024-41128 (#2190)
• Updating to scp-ingest-pipeline:1.40.0 (#2193)

1.88.0

Added

• Infrastructure support for Google Artifact Registry (#2187)

Updated

• Bump nanoid from 3.3.7 to 3.3.8 build failure (#2183)
• Bundler (#2185, #2186)

1.87.0

Added

• Console support for pairwise differential expression jobs (#2180)
• Allow specifying sort types for expression scatter plots (#2181)
• Bluesky profile link in footer (#2182)

Changed

• Updating to bundler:2.6.0 to address bundle install issues on Docker build jobs (#2185)

Fixed

• Skip caching defaults if study cannot visualize clusters (#2179)

1.86.1

Changed

• Update to Ingest 1.37.1: Use gene name instead of gene ID for DE from CELLxGENE AnnData #2176

Fixed

• Allow updates in AnnData expression form, extract raw counts if specified (SCP-5871) #2175

1.86.0

Added

• Autocomplete on gene ID and symbol in Explore tab (#2166)
• Scalable expression overlays for pathway diagrams (#2172)

Changed

• Return 404 when specified annotation is not found (#2169)
• Deny obvious malicious requests from security scans (#2169)

Fixed

• Propagate expression axis label for AnnData studies (#2170)

1.85.0

Added

• More robust AnnData ingest: selective cleanup on OOM retries (#2165)

1.84.0

Added

• Gene name search for CELLxGENE AnnData, via Ingest Pipeline 1.37.0 (#2163)

Changed

• Bump rexml from 3.3.6 to 3.3.9 (#2162)