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2 parents 2e85325 + 5978a73 commit 3411b7eCopy full SHA for 3411b7e
1 file changed
pipes/WDL/tasks/tasks_nextstrain.wdl
@@ -18,7 +18,7 @@ task nextmeta_prep {
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sample_to_gisaid = {}
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sample_to_assembly = {}
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with open('~{gisaid_meta}', 'rt') as inf:
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- for row in csv.DictReader(inf, delimiter='\t'):
+ for row in csv.DictReader(inf):
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s = row['covv_virus_name'][len('hCoV-19/'):]
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samples.append(s)
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sample_to_gisaid[s] = row
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