We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
1 parent 2dd79b5 commit 5d41788Copy full SHA for 5d41788
1 file changed
pipes/WDL/tasks/tasks_ncbi.wdl
@@ -1128,10 +1128,10 @@ task table2asn {
1128
Int genetic_code = 1
1129
1130
String out_basename = basename(assembly_fasta, ".fasta")
1131
- Int machine_mem_gb = 8
+ Int machine_mem_gb = 12 # 8 is enough for small viruses but DNA viruses seem to require more
1132
String docker = "quay.io/broadinstitute/viral-phylo:2.4.1.0" # this could be a simpler docker image, we don't use anything beyond table2asn itself
1133
}
1134
-
+ Int disk_size = 50
1135
1136
parameter_meta {
1137
assembly_fasta: {
@@ -1201,6 +1201,8 @@ task table2asn {
1201
cpu: 2
1202
dx_instance_type: "mem1_ssd1_v2_x2"
1203
maxRetries: 2
1204
+ disks: "local-disk " + disk_size + " HDD"
1205
+ disk: disk_size + " GB" # TES
1206
1207
1208
0 commit comments