Skip to content

Commit 5d41788

Browse files
committed
table2asn more ram and less disk
1 parent 2dd79b5 commit 5d41788

1 file changed

Lines changed: 4 additions & 2 deletions

File tree

pipes/WDL/tasks/tasks_ncbi.wdl

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1128,10 +1128,10 @@ task table2asn {
11281128
Int genetic_code = 1
11291129

11301130
String out_basename = basename(assembly_fasta, ".fasta")
1131-
Int machine_mem_gb = 8
1131+
Int machine_mem_gb = 12 # 8 is enough for small viruses but DNA viruses seem to require more
11321132
String docker = "quay.io/broadinstitute/viral-phylo:2.4.1.0" # this could be a simpler docker image, we don't use anything beyond table2asn itself
11331133
}
1134-
1134+
Int disk_size = 50
11351135

11361136
parameter_meta {
11371137
assembly_fasta: {
@@ -1201,6 +1201,8 @@ task table2asn {
12011201
cpu: 2
12021202
dx_instance_type: "mem1_ssd1_v2_x2"
12031203
maxRetries: 2
1204+
disks: "local-disk " + disk_size + " HDD"
1205+
disk: disk_size + " GB" # TES
12041206
}
12051207
}
12061208

0 commit comments

Comments
 (0)