bump to latest pango (#285)

dpark01 · web-flow · commit 69f019cff92a · 2021-04-30T13:49:07.000-04:00
diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl
@@ -108,7 +108,7 @@ task pangolin_one_sample {
         File   genome_fasta
         Int?   min_length
         Float? max_ambig
-        String docker = "staphb/pangolin:2.3.8-pangolearn-2021-04-23"
+        String docker = "staphb/pangolin:2.4-pangolearn-2021-04-28"
     }
     String basename = basename(genome_fasta, ".fasta")
     command {
diff --git a/requirements-modules.txt b/requirements-modules.txt
@@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre
 broadinstitute/ncbi-tools=2.10.7.2
 nextstrain/base=build-20210318T204019Z
 andersenlabapps/ivar=1.3.1
-staphb/pangolin=2.3.8-pangolearn-2021-04-23
+staphb/pangolin=2.4-pangolearn-2021-04-28
 nextstrain/nextclade=0.13.0

Original file line number	Diff line number	Diff line change
`@@ -108,7 +108,7 @@ task pangolin_one_sample {`
`108`	`108`	`File genome_fasta`
`109`	`109`	`Int? min_length`
`110`	`110`	`Float? max_ambig`
`111`		`- String docker = "staphb/pangolin:2.3.8-pangolearn-2021-04-23"`
	`111`	`+ String docker = "staphb/pangolin:2.4-pangolearn-2021-04-28"`
`112`	`112`	`}`
`113`	`113`	`String basename = basename(genome_fasta, ".fasta")`
`114`	`114`	`command {`