Merge pull request #396 from broadinstitute/dp-vadr

dpark01 · web-flow · commit 75d3ef52b719 · 2021-12-06T15:34:24.000-05:00
bump vadr docker (new models for sc2)
diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl
@@ -924,7 +924,7 @@ task vadr {
     File   genome_fasta
     String vadr_opts = "--glsearch -s -r --nomisc --mkey sarscov2 --lowsim5seq 6 --lowsim3seq 6 --alt_fail lowscore,insertnn,deletinn"
 
-    String docker = "quay.io/staphb/vadr:1.3"
+    String docker = "quay.io/staphb/vadr:1.3-models-1.3-2"
     Int    minlen = 50
     Int    maxlen = 30000
   }

Original file line number	Diff line number	Diff line change
`@@ -924,7 +924,7 @@ task vadr {`
`924`	`924`	`File genome_fasta`
`925`	`925`	`String vadr_opts = "--glsearch -s -r --nomisc --mkey sarscov2 --lowsim5seq 6 --lowsim3seq 6 --alt_fail lowscore,insertnn,deletinn"`
`926`	`926`
`927`		`- String docker = "quay.io/staphb/vadr:1.3"`
	`927`	`+ String docker = "quay.io/staphb/vadr:1.3-models-1.3-2"`
`928`	`928`	`Int minlen = 50`
`929`	`929`	`Int maxlen = 30000`
`930`	`930`	`}`