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fix(join_read_classifications): bump disk allocation to 8x + 50 GB
Previous 4x + 10 GB was insufficient for large K2 TSV files which decompress ~18x and require DuckDB spill space for intermediate tables.
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pipes/WDL/tasks/tasks_metagenomics.wdl

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3308,8 +3308,8 @@ CODE
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docker: docker
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memory: "~{machine_mem_gb} GB"
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cpu: 1
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disks: "local-disk ~{ceil((size(kallisto_summary, 'GB') + size(kraken2_reads, 'GB') + size(vnp_reads, 'GB') + size(genomad_virus_summary, 'GB') + size(centrifuger_reads, 'GB')) * 4 + 10)} HDD"
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disk: "~{ceil((size(kallisto_summary, 'GB') + size(kraken2_reads, 'GB') + size(vnp_reads, 'GB') + size(genomad_virus_summary, 'GB') + size(centrifuger_reads, 'GB')) * 4 + 10)} GB"
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disks: "local-disk ~{ceil((size(kallisto_summary, 'GB') + size(kraken2_reads, 'GB') + size(vnp_reads, 'GB') + size(genomad_virus_summary, 'GB') + size(centrifuger_reads, 'GB')) * 8 + 50)} HDD"
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disk: "~{ceil((size(kallisto_summary, 'GB') + size(kraken2_reads, 'GB') + size(vnp_reads, 'GB') + size(genomad_virus_summary, 'GB') + size(centrifuger_reads, 'GB')) * 8 + 50)} GB"
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dx_instance_type: "mem1_ssd1_v2_x2"
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preemptible: 2
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maxRetries: 2

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