bugfix

dpark01 · dpark01 · commit 9e881b1555b5 · 2025-03-05T16:11:43.000-05:00
diff --git a/pipes/WDL/workflows/classify_single.wdl b/pipes/WDL/workflows/classify_single.wdl
@@ -162,7 +162,7 @@ workflow classify_single {
           input:
               tsv = select_first([taxid_to_ref_accessions_tsv]),
               idx_col = "accessions",
-              idx_val = sub(select_references.top_matches_per_cluster_basenames, "-", ":"),
+              idx_val = sub(top_match, "-", ":"),
               add_header = ["taxid", "isolate_prefix", "taxname", "accessions"]
         }
         Int skani_hit_taxid = tax_lookup.map["taxid"]

Original file line number	Diff line number	Diff line change
`@@ -162,7 +162,7 @@ workflow classify_single {`
`162`	`162`	`input:`
`163`	`163`	`tsv = select_first([taxid_to_ref_accessions_tsv]),`
`164`	`164`	`idx_col = "accessions",`
`165`		`- idx_val = sub(select_references.top_matches_per_cluster_basenames, "-", ":"),`
	`165`	`+ idx_val = sub(top_match, "-", ":"),`
`166`	`166`	`add_header = ["taxid", "isolate_prefix", "taxname", "accessions"]`
`167`	`167`	`}`
`168`	`168`	`Int skani_hit_taxid = tax_lookup.map["taxid"]`