fix plumbing in demux_deplete

dpark01 · dpark01 · commit fedc2f1ae56f · 2021-01-16T16:48:18.000-05:00
diff --git a/pipes/WDL/workflows/demux_deplete.wdl b/pipes/WDL/workflows/demux_deplete.wdl
@@ -61,10 +61,10 @@ workflow demux_deplete {
         }
     }
     call demux.merge_maps as meta_sample {
-        input: maps_jsons = meta_default_sample.out_json
+        input: maps_jsons = illumina_demux.meta_by_sample_json
     }
     call demux.merge_maps as meta_filename {
-        input: maps_jsons = meta_default_filename.out_json
+        input: maps_jsons = illumina_demux.meta_by_filename_json
     }
 
     #### human depletion & spike-in counting for all files

Original file line number	Diff line number	Diff line change
`@@ -61,10 +61,10 @@ workflow demux_deplete {`
`61`	`61`	`}`
`62`	`62`	`}`
`63`	`63`	`call demux.merge_maps as meta_sample {`
`64`		`- input: maps_jsons = meta_default_sample.out_json`
	`64`	`+ input: maps_jsons = illumina_demux.meta_by_sample_json`
`65`	`65`	`}`
`66`	`66`	`call demux.merge_maps as meta_filename {`
`67`		`- input: maps_jsons = meta_default_filename.out_json`
	`67`	`+ input: maps_jsons = illumina_demux.meta_by_filename_json`
`68`	`68`	`}`
`69`	`69`
`70`	`70`	`#### human depletion & spike-in counting for all files`