TSPS-715 Add LowPassImputationQC wdl #54
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| name: Test Glimpse2LowPassImputationQC | |
| # Controls when the workflow will run | |
| on: | |
| pull_request: | |
| branches: [ "develop", "staging", "master" ] | |
| # Only run if files in these paths changed: | |
| #################################### | |
| # SET PIPELINE SPECIFIC PATHS HERE # | |
| #################################### | |
| paths: | |
| - 'pipelines/wdl/glimpse/low_pass_imputation/input_qc/**' | |
| - 'verification/VerifyGlimpse2LowPassImputationQC.wdl' | |
| - 'verification/test-wdls/TestGlimpse2LowPassImputationQC.wdl' | |
| - 'tasks/wdl/Utilities.wdl' | |
| - 'tasks/wdl/TerraCopyFilesFromCloudToCloud.wdl' | |
| - '.github/workflows/test_low_pass_imputation_qc.yml' | |
| - '.github/workflows/warp_test_workflow.yml' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| inputs: | |
| useCallCache: | |
| description: 'Use call cache (default: true)' | |
| required: false | |
| default: "true" | |
| updateTruth: | |
| description: 'Update truth files (default: false)' | |
| required: false | |
| default: "false" | |
| testType: | |
| description: 'Specify the type of test (Plumbing or Scientific)' | |
| required: false | |
| type: choice | |
| options: | |
| - Plumbing | |
| - Scientific | |
| truthBranch: | |
| description: 'Specify the branch for truth files (default: master)' | |
| required: false | |
| default: "master" | |
| env: | |
| # pipeline configuration | |
| PIPELINE_NAME: TestGlimpse2LowPassImputationQC | |
| DOCKSTORE_PIPELINE_NAME: Glimpse2LowPassImputationQC | |
| PIPELINE_DIR: "pipelines/wdl/glimpse/low_pass_imputation/input_qc" | |
| # workspace configuration | |
| TESTING_WORKSPACE: WARP Tests | |
| WORKSPACE_NAMESPACE: warp-pipelines | |
| # service account configuration | |
| SA_JSON_B64: ${{ secrets.PDT_TESTER_SA_B64 }} | |
| USER: pdt-tester@warp-pipeline-dev.iam.gserviceaccount.com | |
| jobs: | |
| TestGlimpse2LowPassImputationQC: | |
| permissions: | |
| contents: 'read' | |
| id-token: 'write' | |
| actions: write | |
| uses: ./.github/workflows/warp_test_workflow.yml | |
| with: | |
| pipeline_name: TestGlimpse2LowPassImputationQC | |
| dockstore_pipeline_name: Glimpse2LowPassImputationQC | |
| pipeline_dir: pipelines/wdl/glimpse/low_pass_imputation/input_qc | |
| use_call_cache: ${{ github.event.inputs.useCallCache || 'true' }} | |
| update_truth: ${{ github.event.inputs.updateTruth || 'false' }} | |
| test_type: ${{ github.event.inputs.testType }} | |
| truth_branch: ${{ github.event.inputs.truthBranch || 'master' }} | |
| secrets: | |
| PDT_TESTER_SA_B64: ${{ secrets.PDT_TESTER_SA_B64 }} | |
| DOCKSTORE_TOKEN: ${{ secrets.DOCKSTORE_TOKEN }} |