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Jose Soto
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fix changelog message
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pipelines/wdl/arrays/imputation_beagle/ImputationBeagle.changelog.md

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# 2.5.1
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2026-2-04 (Date of Last Commit)
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* Update input_qc_version to 1.2.5 to match the latest changes in InputQC wdl.
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* Update input_qc_version to 1.3.0 to match the latest changes in InputQC wdl.
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# 2.5.0
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2026-01-27 (Date of Last Commit)

tasks/wdl/ImputationBeagleQcTasks.wdl

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# create empty qc messages file
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touch qc_messages.txt
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# check for a large number (for arrays) of variants in input vcf and exit if greater than 3 million
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# check for a large number of variants in input vcf and exit if greater than 3 million
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line_count=$(bcftools stats ~{vcf_input} | grep "number of records:" | awk '{print $6}')
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if [ "$line_count" -gt 3000000 ]; then
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echo "Greater than 3 million variants found in the input VCF." >> qc_messages.txt

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