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pipelines/wdl/arrays/imputation_beagle Expand file tree Collapse file tree Original file line number Diff line number Diff line change 11# 2.5.1
222026-2-04 (Date of Last Commit)
33
4- * Update input_qc_version to 1.2.5 to match the latest changes in InputQC wdl.
4+ * Update input_qc_version to 1.3.0 to match the latest changes in InputQC wdl.
55
66# 2.5.0
772026-01-27 (Date of Last Commit)
Original file line number Diff line number Diff line change @@ -18,7 +18,7 @@ task QcChecks {
1818 # create empty qc messages file
1919 touch qc_messages.txt
2020
21- # check for a large number (for arrays) of variants in input vcf and exit if greater than 3 million
21+ # check for a large number of variants in input vcf and exit if greater than 3 million
2222 line_count = $(bcftools stats ~{vcf_input } | grep "number of records:" | awk '{print $6}' )
2323 if [ "$line_count " -gt 3000000 ]; then
2424 echo "Greater than 3 million variants found in the input VCF." >> qc_messages.txt
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