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Update website/docs/Pipelines/BuildIndices_Pipeline/README.md
Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
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website/docs/Pipelines/BuildIndices_Pipeline/README.md

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@@ -174,7 +174,7 @@ Inputs for the Macaque reference below were modified using a custom tool to hand
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| BWA Index TAR | `gs://gcp-public-data--broad-references/M.mulatta/Mmul_10/bwa/v2_2_1/bwa-mem2-2.2.1-Macaque-NCBI-build-GCF_003339765.1.tar` |
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| GTF Annotation | `gs://gcp-public-data--broad-references/M.mulatta/Mmul_10/star/v2_7_10a/10x_filtered/mt_v103_modified.annotation.gtf` |
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| Chromosome Sizes | `gs://gcp-public-data--broad-references/M.mulatta/Mmul_10/bwa/v2_2_1/chrom.sizes` |
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| Fasta | `gs://gcp-public-data--broad-references/M.mulatta/Mmul_10/single_nucleus_smart_seq_2/GCF_003339765.1_Mmul_10_genomic.fna` |
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| FASTA | `gs://gcp-public-data--broad-references/M.mulatta/Mmul_10/single_nucleus_smart_seq_2/GCF_003339765.1_Mmul_10_genomic.fna` |
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This macaque reference works with the Optimus, Multiome, and Paired-tag workflows. However, mitochondrial genes are not demarcated with an "mt-" tag. A separate text file with MT genes is required. An example is the list below:

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