update sci arrayimputationqc json

nikellepetrillo · nikellepetrillo · commit 541acccf21c7 · 2026-03-04T10:30:29.000-05:00
diff --git a/pipelines/wdl/arrays/imputation_beagle/input_qc/test_inputs/Scientific/NA12878_x10_hg38_arrays_qc_success.json b/pipelines/wdl/arrays/imputation_beagle/input_qc/test_inputs/Scientific/NA12878_x10_hg38_arrays_qc_success.json
@@ -3,6 +3,6 @@
     "ArrayImputationQC.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict",
     "ArrayImputationQC.reference_panel_path_prefix": "gs://pd-test-storage-public/ArrayImputationQC/input/plumbing/1000G_HGDP_no_singletons_reference_panelhgdp.tgp.gwaspy.AN_added.bcf.ac2",
     "ArrayImputationQC.contigs": ["chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22","chrX","chrY"],
-    "ArrayImputationQC.genetic_maps_path": "gs://pd-test-storage-public/ArrayImputationQC/input/plumbing/plink-genetic-maps/",
+    "ArrayImputationQC.genetic_maps_path": "gs://pd-test-storage-public/ArrayImputationQC/input/scientific/plink-genetic-maps/",
     "ArrayImputationQC.output_basename": "scientific_test_success"
 }

Original file line number	Diff line number	Diff line change
`@@ -3,6 +3,6 @@`
`3`	`3`	`"ArrayImputationQC.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict",`
`4`	`4`	`"ArrayImputationQC.reference_panel_path_prefix": "gs://pd-test-storage-public/ArrayImputationQC/input/plumbing/1000G_HGDP_no_singletons_reference_panelhgdp.tgp.gwaspy.AN_added.bcf.ac2",`
`5`	`5`	`"ArrayImputationQC.contigs": ["chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22","chrX","chrY"],`
`6`		`- "ArrayImputationQC.genetic_maps_path": "gs://pd-test-storage-public/ArrayImputationQC/input/plumbing/plink-genetic-maps/",`
	`6`	`+ "ArrayImputationQC.genetic_maps_path": "gs://pd-test-storage-public/ArrayImputationQC/input/scientific/plink-genetic-maps/",`
`7`	`7`	`"ArrayImputationQC.output_basename": "scientific_test_success"`
`8`	`8`	`}`