updated changelogs and versions

ekiernan · ekiernan · commit a2fec6b2630a · 2025-03-17T10:39:51.000-04:00
diff --git a/pipelines/broad/dna_seq/germline/single_sample/ugwgs/UltimaGenomicsWholeGenomeGermline.changelog.md b/pipelines/broad/dna_seq/germline/single_sample/ugwgs/UltimaGenomicsWholeGenomeGermline.changelog.md
@@ -1,3 +1,8 @@
+# 1.1.5
+2025-03-17 (Date of Last Commit)
+
+* Updated Picard docker for CompareMetrics from  2.20.4-SNAPSHOT to 2.26.10-SNAPSHOT to fix security vulnerability
+
 # 1.1.4
 2025-02-21 (Date of Last Commit)
 
diff --git a/pipelines/broad/dna_seq/germline/single_sample/ugwgs/UltimaGenomicsWholeGenomeGermline.wdl b/pipelines/broad/dna_seq/germline/single_sample/ugwgs/UltimaGenomicsWholeGenomeGermline.wdl
@@ -50,7 +50,7 @@ workflow UltimaGenomicsWholeGenomeGermline {
     filtering_model_no_gt_name: "String describing the optional filtering model; default set to rf_model_ignore_gt_incl_hpol_runs"
   }
 
-  String pipeline_version = "1.1.4"
+  String pipeline_version = "1.1.5"
 
 
   References references = alignment_references.references
diff --git a/pipelines/broad/dna_seq/somatic/single_sample/ugwgs/UltimaGenomicsWholeGenomeCramOnly.changelog.md b/pipelines/broad/dna_seq/somatic/single_sample/ugwgs/UltimaGenomicsWholeGenomeCramOnly.changelog.md
@@ -1,3 +1,8 @@
+# 1.0.25
+2025-03-17 (Date of Last Commit)
+
+* Updated Picard docker for CompareMetrics from  2.20.4-SNAPSHOT to 2.26.10-SNAPSHOT to fix security vulnerability
+
 # 1.0.24
 2025-02-21 (Date of Last Commit)
 
diff --git a/pipelines/broad/dna_seq/somatic/single_sample/ugwgs/UltimaGenomicsWholeGenomeCramOnly.wdl b/pipelines/broad/dna_seq/somatic/single_sample/ugwgs/UltimaGenomicsWholeGenomeCramOnly.wdl
@@ -43,7 +43,7 @@ workflow UltimaGenomicsWholeGenomeCramOnly {
     save_bam_file: "If true, then save intermeidate ouputs used by germline pipeline (such as the output BAM) otherwise they won't be kept as outputs."
   }
 
-  String pipeline_version = "1.0.24"
+  String pipeline_version = "1.0.25"
 
   References references = alignment_references.references
 

Original file line number	Diff line number	Diff line change
`@@ -50,7 +50,7 @@ workflow UltimaGenomicsWholeGenomeGermline {`
`50`	`50`	`filtering_model_no_gt_name: "String describing the optional filtering model; default set to rf_model_ignore_gt_incl_hpol_runs"`
`51`	`51`	`}`
`52`	`52`
`53`		`- String pipeline_version = "1.1.4"`
	`53`	`+ String pipeline_version = "1.1.5"`
`54`	`54`
`55`	`55`
`56`	`56`	`References references = alignment_references.references`
Original file line number	Diff line number	Diff line change
`@@ -43,7 +43,7 @@ workflow UltimaGenomicsWholeGenomeCramOnly {`
`43`	`43`	`save_bam_file: "If true, then save intermeidate ouputs used by germline pipeline (such as the output BAM) otherwise they won't be kept as outputs."`
`44`	`44`	`}`
`45`	`45`
`46`		`- String pipeline_version = "1.0.24"`
	`46`	`+ String pipeline_version = "1.0.25"`
`47`	`47`
`48`	`48`	`References references = alignment_references.references`
`49`	`49`